Desmond Tutorial

Desmond Tutorial
Desmond Tutorial
Figure 1.5 Imported protein structure file
Your protein
appears in the
workspace.
Red dots represent
crystal water
oxygen atoms.
Click the ‘Ribbon’
button...
...and select ‘Delete
Ribbons’ from the
popup menu.
8. Switch from ribbon view to ball‐and‐stick view by clicking the Ribbons button and
selecting Delete Ribbons from the pop‐up menu that appears as shown in Figure 1.5.
Next, as shown in Figure 1.6, double‐click the Draw Atoms in Ball & Stick button and,
finally, click the Color by Elements button to color the carbons in the structure green.
6 D. E. Shaw Research September 2008