Administering Platform LSF - SAS

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Supported Resource Usage Limits and Syntax Format Normalized run time Platform MultiCluster Thread limit run_limit is in the form [hour:]minute, where minute can be greater than 59. 3.5 hours can either be specified as 3:30 or 210. The run time limit is normalized according to the CPU factor of the submission host and execution host. The run limit is scaled so that the job has approximately the same run time for a given run limit, even if it is sent to a host with a faster or slower CPU. For example, if a job is submitted from a host with a CPU factor of 2 and executed on a host with a CPU factor of 3, the run limit is multiplied by 2/3 because the execution host can do the same amount of work as the submission host in 2/3 of the time. If the optional host name or host model is not given, the run limit is scaled based on the DEFAULT_HOST_SPEC specified in the lsb.params file. (If DEFAULT_HOST_SPEC is not defined, the fastest batch host in the cluster is used as the default.) If host or host model is given, its CPU scaling factor is used to adjust the actual run limit at the execution host. The following example specifies that myjob can run for 10 minutes on a DEC3000 host, or the corresponding time on any other host: % bsub -W 10/DEC3000 myjob If ABS_RUNLIMIT=Y is defined in lsb.params, the run time limit is not normalized by the host CPU factor. Absolute wall-clock run time is used for all jobs submitted with a run limit. See “CPU Time and Run Time Normalization” on page 357 for more information. For MultiCluster jobs, if no other CPU time normalization host is defined and information about the submission host is not available, LSF uses the host with the largest CPU factor (the fastest host in the cluster). The ABS_RUNLIMIT parameter in lsb.params is is not supported in either MultiCluster model; run time limit is normalized by the CPU factor of the execution host. Job syntax (bsub) Queue syntax (lsb.queues) Fomat/Units -T thread_limit THREADLIMIT=[default] maximum integer Sets the limit of the number of concurrent threads to thread_limit for the whole job. The default is no limit. Exceeding the limit causes the job to terminate. The system sends the following signals in sequence to all processes belongs to the job: SIGINT, SIGTERM, and SIGKILL. If a default thread limit is specified, jobs submitted to the queue without a joblevel thread limit are killed when the default thread limit is reached. If you specify only one limit, it is the maximum, or hard, thread limit. If you specify two limits, the first one is the default, or soft, thread limit, and the second one is the maximum thread limit. 354 Administering Platform LSF
Chapter 26 Runtime Resource Usage Limits Stack segment size limit Virtual memory (swap) limit Job syntax (bsub) Queue syntax (lsb.queues) Fomat/Units -S stack_limit STACKLIMIT=limit integer KB Sets a per-process (soft) stack segment size limit in KB for each process that belongs to this batch job. An sbrk() call to extend the stack segment beyond the stack limit causes the process to be terminated. The default is no soft limit. Examples Job syntax (bsub) Queue syntax (lsb.queues) Fomat/Units -v swap_limit SWAPLIMIT=limit integer KB Sets the total process virtual memory limit to swap_limit in KB for the whole job. The default is no limit. Exceeding the limit causes the job to terminate. This limit applies to the whole job, no matter how many processes the job may contain. Queue-level limits ◆ CPULIMIT = 20/hostA 15 The first number is the default CPU limit. The second number is the maximum CPU limit. However, the default CPU limit is ignored because it is a higher value than the maximum CPU limit. ◆ CPULIMIT = 10/hostA In this example, the lack of a second number specifies that there is no default CPU limit. The specified number is considered as the default and maximum CPU limit. ◆ RUNLIMIT = 10/hostA 15 The first number is the default run limit. The second number is the maximum run limit. The first number specifies that the default run limit is to be used for jobs that are submitted without a specified run limit (without the -W option of bsub). ◆ RUNLIMIT = 10/hostA No default run limit is specified. The specified number is considered as the default and maximum run limit. ◆ THREADLIMIT=6 No default thread limit is specified. The value 6 is the default and maximum thread limit. ◆ THREADLIMIT=6 8 The first value (6) is the default thread limit. The second value (8) is the maximum thread limit. Administering Platform LSF 355
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
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Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
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Contents 40 Non-Shared File Systems
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Welcome Contents ◆ “About This
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Welcome Command notation Notation M
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Welcome Platform LSF License Schedu
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Welcome Resource requirement specif
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Welcome Run-time enhancements Threa
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Welcome Environment variables ◆
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Welcome New files added to installa
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Technical Support Contact Platform
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C H A P T E R 1 About Platform LSF
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Chapter 1 About Platform LSF Job sl
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Host t
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Chapter 1 About Platform LSF Extern
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Chapter 1 About Platform LSF Job Li
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C H A P T E R 2 How the System Work
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Chapter 2 How the System Works Queu
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Chapter 2 How the System Works Disp
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Job Execution Environment Shared us
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Fault Tolerance Dynamic master host
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P A R T I Managing Your Cluster Con
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Viewing Cluster Information Viewing
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Default Directory Structures Defaul
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Default Directory Structures Window
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Controlling Daemons Controlling Dae
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Controlling mbatchd Controlling mba
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Reconfiguring Your Cluster 3 Run ba
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Host States Host States Host states
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Viewing Host Information Viewing Ho
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Viewing Host Information type Viewi
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Controlling Hosts Controlling Hosts
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Adding a Host Adding a Host Use lsf
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Removing a Host Removing a Host CAU
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Adding and Removing Hosts Dynamical
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Adding and Removing Hosts Dynamical
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Adding Host Types and Host Models t
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Registering Service Ports NIS or NI
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Host Naming Host Naming Network add
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Hosts with Multiple Addresses Examp
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Host Groups Host Groups Where to us
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Tuning CPU Factors Tuning CPU Facto
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Handling Host-level Job Exceptions
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Handling Host-level Job Exceptions
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Queue States Queue States Queue sta
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Viewing Queue Information SCHEDULIN
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Controlling Queues Controlling Queu
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Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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Page 307 and 308: C H A P T E R 23 Job Checkpoint, Re
Page 309 and 310: Approaches to Checkpointing Kernel-
Page 311 and 312: Chapter 23 Job Checkpoint, Restart,
Page 313 and 314: Checkpointing a Job Prerequisites C
Page 315 and 316: Making Jobs Checkpointable Manually
Page 317 and 318: Enabling Periodic Checkpointing At
Page 319 and 320: Restarting Checkpointed Jobs Requir
Page 321 and 322: Chapter 23 Job Checkpoint, Restart,
Page 323 and 324: C H A P T E R 24 Chunk Job Dispatch
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Page 327 and 328: Submitting and Controlling Chunk Jo
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Page 331 and 332: C H A P T E R Ë 25 Job Arrays LSF
Page 333 and 334: Chapter 25 Job Arrays Maximum size
Page 335 and 336: Redirecting Standard Input and Outp
Page 337 and 338: Chapter 25 Job Arrays Job Array Dep
Page 339 and 340: Chapter 25 Job Arrays Specific job
Page 341 and 342: Requeuing a Job Array Chapter 25 Jo
Page 343: P A R T V Controlling Job Execution
Page 346 and 347: About Resource Usage Limits About R
Page 348 and 349: Specifying Resource Usage Limits Sp
Page 350 and 351: Specifying Resource Usage Limits If
Page 352 and 353: Supported Resource Usage Limits and
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Page 358 and 359: CPU Time and Run Time Normalization
Page 360 and 361: Automatic Job Suspension Automatic
Page 362 and 363: Suspending Conditions Suspending Co
Page 364 and 365: Suspending Conditions Viewing suspe
Page 366 and 367: About Pre-Execution and Post-Execut
Page 368 and 369: Configuring Pre- and Post-Execution
Page 370 and 371: Configuring Pre- and Post-Execution
Page 372 and 373: About Job Starters About Job Starte
Page 374 and 375: Command-Level Job Starters Command-
Page 376 and 377: Queue-Level Job Starters Queue-Leve
Page 378 and 379: Controlling Execution Environment U
Page 380 and 381: Understanding External Executables
Page 382 and 383: Using esub Option LSB_SUB_EXCEPTION
Page 384 and 385: Using esub General esub logic Rejec
Page 386 and 387: Using esub # Deny userC the ability
Page 388 and 389: Working with eexec Working with eex
Page 390 and 391: Default Job Control Actions Default
Page 392 and 393: Configuring Job Control Actions Con
Page 394 and 395: Configuring Job Control Actions Exa
Page 396 and 397: Customizing Cross-Platform Signal C
Page 399 and 400: C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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C H A P T E R 40 Non-Shared File Sy
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Chapter 40 Non-Shared File Systems
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Chapter 40 Non-Shared File Systems
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C H A P T E R 41 Error and Event Lo
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Chapter 41 Error and Event Logging
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System Event Log CAUTION Chapter 41
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Chapter 41 Error and Event Logging
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C H A P T E R 42 Troubleshooting an
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Common LSF Problems LIM dies quietl
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Chapter 42 Troubleshooting and Erro
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Setting Daemon Timing Levels Chapte
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P A R T IX LSF Utilities Contents
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About lstcsh About lstcsh The lstcs
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Local and Remote Modes Local and Re
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Differences from Other Shells Diffe
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Starting lstcsh Starting lstcsh Sta
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Host Redirection Host Redirection E
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Built-in Commands Built-in Commands
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Writing Shell Scripts in lstcsh Wri
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Index job migration 321 job requeue
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Index D daemons authd 496 authentic
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Index file spooling. See command fi
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Index Internet addresses, matching
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Index host locked 279 interactive j
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Index pre-42 UNIX directory structu
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Index disabling 317 job-level 317 q
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Index associating with hosts 155 Bo
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Index status closed in bhosts 70 jo
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Index 580 Administering Platform LS
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Administering Platform LSF - SAS

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