Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

File Transfer Mechanism (lsrcp) File Transfer Mechanism (lsrcp) Limitations to lsrcp Workarounds rcp on UNIX Custom file transfer mechanism The LSF remote file access mechanism (bsub -f) uses lsrcp to process the file transfer. The lsrcp command tries to connect to RES on the submission host to handle the file transfer. See “Remote File Access” on page 516 for more information about using bsub -f. Because LSF client hosts do not run RES, jobs that are submitted from client hosts should only specify bsub -f if rcp is allowed. You must set up the permissions for rcp if account mapping is used. File transfer using lscrp is not supported in the following contexts: ◆ If LSF account mapping is used; lsrcp fails when running under a different user account ◆ LSF client hosts do not run RES, so lsrcp cannot contact RES on the submission host See “User Account Mapping” on page 503 for more information. In these situations, use the following workarounds: If lsrcp cannot contact RES on the submission host, it attempts to use rcp to copy the file. You must set up the /etc/hosts.equiv or HOME/.rhosts file in order to use rcp. See the rcp(1) and rsh(1) man pages for more information on using the rcp command. You can replace lsrcp with your own file transfer mechanism as long as it supports the same syntax as lsrcp. This might be done to take advantage of a faster interconnection network, or to overcome limitations with the existing lsrcp. sbatchd looks for the lsrcp executable in the LSF_BINDIR directory as specified in the lsf.conf file. 518 Administering Platform LSF
C H A P T E R 41 Error and Event Logging Contents ◆ “System Directories and Log Files” on page 520 ◆ “Managing Error Logs” on page 522 ◆ “System Event Log” on page 523 ◆ “Duplicate Logging of Event Logs” on page 524 Administering Platform LSF 519
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
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Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
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Contents 40 Non-Shared File Systems
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Welcome Contents ◆ “About This
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Welcome Command notation Notation M
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Welcome Platform LSF License Schedu
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Welcome Resource requirement specif
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Welcome Run-time enhancements Threa
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Welcome Environment variables ◆
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Welcome New files added to installa
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Technical Support Contact Platform
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C H A P T E R 1 About Platform LSF
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Chapter 1 About Platform LSF Job sl
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Host t
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Chapter 1 About Platform LSF Extern
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Chapter 1 About Platform LSF Job Li
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C H A P T E R 2 How the System Work
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Chapter 2 How the System Works Queu
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Chapter 2 How the System Works Disp
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Job Execution Environment Shared us
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Fault Tolerance Dynamic master host
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P A R T I Managing Your Cluster Con
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Viewing Cluster Information Viewing
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Default Directory Structures Defaul
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Default Directory Structures Window
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Controlling Daemons Controlling Dae
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Controlling mbatchd Controlling mba
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Reconfiguring Your Cluster 3 Run ba
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Host States Host States Host states
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Viewing Host Information Viewing Ho
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Viewing Host Information type Viewi
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Controlling Hosts Controlling Hosts
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Adding a Host Adding a Host Use lsf
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Removing a Host Removing a Host CAU
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Adding and Removing Hosts Dynamical
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Adding and Removing Hosts Dynamical
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Adding Host Types and Host Models t
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Registering Service Ports NIS or NI
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Host Naming Host Naming Network add
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Hosts with Multiple Addresses Examp
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Host Groups Host Groups Where to us
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Tuning CPU Factors Tuning CPU Facto
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Handling Host-level Job Exceptions
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Handling Host-level Job Exceptions
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Queue States Queue States Queue sta
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Viewing Queue Information SCHEDULIN
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Controlling Queues Controlling Queu
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Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
Page 468 and 469: Using Advance Reservation Removing
Page 470 and 471: Using Advance Reservation 6:10 0 10
Page 472 and 473: Using Advance Reservation Modifying
Page 474 and 475: Using Advance Reservation 474 Admin
Page 477 and 478: C H A P T E R 36 Event Generation C
Page 479 and 480: Chapter 36 Event Generation Events
Page 481 and 482: C H A P T E R 37 Tuning the Cluster
Page 483 and 484: Adjusting LIM Parameters RUNWINDOW
Page 485 and 486: Chapter 37 Tuning the Cluster Compa
Page 487 and 488: Changing Default LIM Behavior to Im
Page 489 and 490: Chapter 37 Tuning the Cluster Whene
Page 491 and 492: Tuning mbatchd on UNIX Operating sy
Page 493 and 494: C H A P T E R 38 Authentication Con
Page 495 and 496: Chapter 38 Authentication eauth -c
Page 497 and 498: Chapter 38 Authentication How LSF d
Page 499 and 500: Chapter 38 Authentication Correctin
Page 501 and 502: Chapter 38 Authentication About Dae
Page 503 and 504: User Account Mapping Chapter 38 Aut
Page 505 and 506: C H A P T E R 39 Job Email, and Job
Page 507 and 508: Chapter 39 Job Email, and Job File
Page 513 and 514: C H A P T E R 40 Non-Shared File Sy
Page 515 and 516: Chapter 40 Non-Shared File Systems
Page 517: Chapter 40 Non-Shared File Systems
Page 521 and 522: Chapter 41 Error and Event Logging
Page 523 and 524: System Event Log CAUTION Chapter 41
Page 525 and 526: Chapter 41 Error and Event Logging
Page 527 and 528: C H A P T E R 42 Troubleshooting an
Page 529 and 530: Common LSF Problems LIM dies quietl
Page 531 and 532: Chapter 42 Troubleshooting and Erro
Page 543 and 544: Setting Daemon Timing Levels Chapte
Page 545: P A R T IX LSF Utilities Contents
Page 548 and 549: About lstcsh About lstcsh The lstcs
Page 550 and 551: Local and Remote Modes Local and Re
Page 552 and 553: Differences from Other Shells Diffe
Page 554 and 555: Starting lstcsh Starting lstcsh Sta
Page 556 and 557: Host Redirection Host Redirection E
Page 558 and 559: Built-in Commands Built-in Commands
Page 560 and 561: Writing Shell Scripts in lstcsh Wri
Page 562 and 563: Index job migration 321 job requeue
Page 564 and 565: Index D daemons authd 496 authentic
Page 566 and 567: Index file spooling. See command fi
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Index Internet addresses, matching
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Index host locked 279 interactive j
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Index pre-42 UNIX directory structu
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Index disabling 317 job-level 317 q
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Index associating with hosts 155 Bo
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Index status closed in bhosts 70 jo
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Index 580 Administering Platform LS
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Administering Platform LSF - SAS

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