Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

Index job migration 321 job requeue 301 job rerun 305 queue selection 45 remote execution in lstcsh 551 automount command, NFS (Network File System) 514, 528 automount option, /net 516 B bacct command 247 bacct -U 473 backfill scheduling default run limit 349 description 453 background jobs, bringing to foreground 557 badmin command hopen 74 hrestart 62 hshutdown 62 hstartup 62 logging administrator comments for host open and close 74 for mbatchd restart 64 for queue events 104 LSF event logs 523 mbdrestart 62, 66 qact 104 qclose 104 qinact 104 qopen 104 setuid permission 497 batch jobs accessing files 514, 516 allocating processors 432 email about jobs disabling 506 options 506 file access 380, 516 input and output 506 killing 121 pre- and post-execution commands 366 requeue 300 rerunning and restarting 305 signalling 121 batch log files. See log files batch queues. See queues benchmarks for setting CPU factors 94 Berkeley Internet Name Domain (BIND), host naming 88 bgadd command 124 bgdel command 126 bhist command, LSF event logs 523 bhist -l 126 bhosts command, using 70 bhosts -x, viewing host exception status 73 BIND (Berkeley Internet Name Domain), host naming 88 bjgroup command 124 bjobs command, reservation ID for advance reservation 471 bjobs -g 124 bjobs -x, viewing job exception status 116 bkill -g 126 black hole hosts 96 blimits command 267 bmod -g 125 bmod -is 511 bmod -t 472 bmod -Zs 511 Boolean resources 140 bparams command, viewing configuration parameters 57 bqueues command, cross-queue fairshare information 211 bresume -g 125 brsvadd command 465 brsvdel command 468 brsvs command 469 brun command advance reservation 472 forcing a job to run 119 job preemption 178 bsla command 246 bstop -g 125 bsub command email job notification 506 input and output 506 remote file access 516 submitting a job associated to a job group 124 associated to a service class 241 bsub -f 516 bsub -is 509 bsub -sla 241 bsub -Zs 510 built-in load indices, overriding 163 resources 140 busy host status lsload command 69 status load index 144 busy thresholds, tuning 484 C candidate master hosts, specifying 487 ceiling resource usage limit 348 ceiling run limit 348 chargeback fairshare 236 check_license script, for counted software licenses 280 checkpoint directory 314 checkpointable jobs chunk jobs 328 description 315 checkpoints application-level 309 automatic 318 creating custom programs 310 fault tolerance 308 kernel-level 309 load balancing 308 562 Administering Platform LSF
Index overview 308 periodic 317 restarting job 319 CHKPNT parameter in lsb.queues 315 chsh and lstcsh 555 chunk jobs checkpointing 328 CHUNK_JOB_DURATION parameter in lsb.params 325 configuring queue for 325 description 324 fairshare scheduling 329 job controls 328 killing 328 limitations on queues 326 migrating 328 modifying 328 rerunnable 328 resource usage limits 347 resuming 328 submitting and controlling 327 WAIT status and pending reason 327 CHUNK_JOB_DURATION, parameter in lsb.params 325 client_addr argument to eauth 495 client_port argument to eauth 495 closed host status, bhosts command 68, 70 closed_Adm condition, output of bhosts -l 68 closed_Busy condition, output of bhosts -l 68 closed_Excl condition, output of bhosts -l 68 closed_Full condition, output of bhosts -l 68 closed_LIM condition, output of bhosts -l 68 closed_Lock condition, output of bhosts -l 68 closed_Wind condition, output of bhosts -l 68 cluster administrators description 61 viewing 56 cluster name, viewing 56 clusters configuration file quick reference 65 reconfiguring commands 65 how reconfiguration affects licenses 66 viewing, information about 56 viewing information 56 command file spooling See also job file spooling default directory 510 description 509 JOB_SPOOL_DIR parameter in lsb.params 509 commands built-in 558 checking configuration 172 job starters 372 post-execution. See post-execution commands pre-execution. See pre-execution commands running under user ID 369 using in job control actions 393 Comprehensive System Accounting (IRIX CSA), configuring 521 concurrent threads 354 configuration adding and removing, queues 107 commands for checking 172 preselecting master hosts 487 removing, hosts 78 tuning busy thresholds 484 LIM policies 483 load indices 484 load thresholds 485 mbatchd on UNIX 491 run windows 483 viewing, errors 66 configuration files location 130 non-shared file systems 515 reconfiguration quick reference 65 configuration parameters. See individual parameter names CONTROL_ACTION parameter in lsb.serviceclasses 253 core file size limit 351 CORELIMIT parameter in lsb.queues 351 counted software licenses configuring 280 description 280 CPU factors static resource 148 time normalization 357 tuning in lsf.shared 94 limits per job 351 per process 351 normalization 357 run queue length, description 406 time cumulative and decayed 206 in dynamic user priority calculation 206 time limit, job-level resource limit 351 tuning CPU factors in lsf.shared 94 utilization, ut load index 145, 406 viewing run queue length 94 CPU factor, non-normalized run time limit 354 CPU time, idle job exceptions 109 CPU time normalization 351 cpuf static resource 148 CPULIMIT parameter in lsb.queues 351 Cray, UNICOS accounting log files 520 cross-queue fairshare 211 CSA (IRIX Comprehensive System Accounting), configuring 521 .cshrc file and lstcsh 554 cumulative CPU time 206 custom event handlers 478 custom file transfer, configuring 518 custom resources adding 154 configuring 154 description 152 resource types 140 Administering Platform LSF 563
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
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Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
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Contents 40 Non-Shared File Systems
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Welcome Contents ◆ “About This
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Welcome Command notation Notation M
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Welcome Platform LSF License Schedu
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Welcome Resource requirement specif
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Welcome Run-time enhancements Threa
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Welcome Environment variables ◆
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Welcome New files added to installa
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Technical Support Contact Platform
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C H A P T E R 1 About Platform LSF
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Chapter 1 About Platform LSF Job sl
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Host t
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Chapter 1 About Platform LSF Extern
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Chapter 1 About Platform LSF Job Li
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C H A P T E R 2 How the System Work
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Chapter 2 How the System Works Queu
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Chapter 2 How the System Works Disp
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Job Execution Environment Shared us
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Fault Tolerance Dynamic master host
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P A R T I Managing Your Cluster Con
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Viewing Cluster Information Viewing
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Default Directory Structures Defaul
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Default Directory Structures Window
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Controlling Daemons Controlling Dae
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Controlling mbatchd Controlling mba
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Reconfiguring Your Cluster 3 Run ba
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Host States Host States Host states
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Viewing Host Information Viewing Ho
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Viewing Host Information type Viewi
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Controlling Hosts Controlling Hosts
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Adding a Host Adding a Host Use lsf
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Removing a Host Removing a Host CAU
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Adding and Removing Hosts Dynamical
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Adding and Removing Hosts Dynamical
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Adding Host Types and Host Models t
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Registering Service Ports NIS or NI
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Host Naming Host Naming Network add
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Hosts with Multiple Addresses Examp
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Host Groups Host Groups Where to us
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Tuning CPU Factors Tuning CPU Facto
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Handling Host-level Job Exceptions
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Handling Host-level Job Exceptions
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Queue States Queue States Queue sta
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Viewing Queue Information SCHEDULIN
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Controlling Queues Controlling Queu
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Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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Chapter 39 Job Email, and Job File
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Page 513 and 514: C H A P T E R 40 Non-Shared File Sy
Page 515 and 516: Chapter 40 Non-Shared File Systems
Page 517 and 518: Chapter 40 Non-Shared File Systems
Page 519 and 520: C H A P T E R 41 Error and Event Lo
Page 521 and 522: Chapter 41 Error and Event Logging
Page 523 and 524: System Event Log CAUTION Chapter 41
Page 525 and 526: Chapter 41 Error and Event Logging
Page 527 and 528: C H A P T E R 42 Troubleshooting an
Page 529 and 530: Common LSF Problems LIM dies quietl
Page 531 and 532: Chapter 42 Troubleshooting and Erro
Page 543 and 544: Setting Daemon Timing Levels Chapte
Page 545: P A R T IX LSF Utilities Contents
Page 548 and 549: About lstcsh About lstcsh The lstcs
Page 550 and 551: Local and Remote Modes Local and Re
Page 552 and 553: Differences from Other Shells Diffe
Page 554 and 555: Starting lstcsh Starting lstcsh Sta
Page 556 and 557: Host Redirection Host Redirection E
Page 558 and 559: Built-in Commands Built-in Commands
Page 560 and 561: Writing Shell Scripts in lstcsh Wri
Page 564 and 565: Index D daemons authd 496 authentic
Page 566 and 567: Index file spooling. See command fi
Page 568 and 569: Index Internet addresses, matching
Page 570 and 571: Index host locked 279 interactive j
Page 572 and 573: Index pre-42 UNIX directory structu
Page 574 and 575: Index disabling 317 job-level 317 q
Page 576 and 577: Index associating with hosts 155 Bo
Page 578 and 579: Index status closed in bhosts 70 jo
Page 580: Index 580 Administering Platform LS
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