Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

Controlling Daemons Controlling Daemons Prerequisites Daemon commands To control all daemons in the cluster, you must: ◆ ◆ Be logged on as root or a user listed in the /etc/lsf.sudoers file See the Platform LSF Reference for configuration details of lsf.sudoers. Be able to run the rsh or ssh commands across all LSF hosts without having to enter a password. See your operating system documentation for information about configuring the rsh and ssh commands. The shell command specified by LSF_RSH in lsf.conf is used before rsh is tried. The following is an overview of commands you use to control LSF daemons. Daemon Action Command Permissions All in cluster Start lsfstartup Must be root or a user listed in lsf.sudoers for all these commands Shut down lsfshutdown sbatchd Start badmin hstartup [host_name ...|all] Must be root or a user listed in lsf.sudoers for the startup command Restart badmin hrestart [host_name ...|all] Must be root or the LSF Shut down badmin hshutdown [host_name ...|all] administrator for other commands. mbatchd mbschd Restart badmin mbdrestart Must be root or the LSF administrator for these commands Shut down 1 badmin hshutdown 2 badmin mbdrestart Reconfigure badmin reconfig RES Start lsadmin resstartup [host_name ...|all] Must be root or a user listed in lsf.sudoers for the startup command Shut down lsadmin resshutdown [host_name ...|all] Must be the LSF administrator for Restart lsadmin resrestart [host_name ...|all] other commands LIM Start lsadmin limstartup [host_name ...|all] Must be root or a user listed in lsf.sudoers for the startup command Shut down lsadmin limshutdown [host_name ...|all] Must be the LSF administrator for Restart lsadmin limrestart [host_name ...|all] other commands Restartall in cluster lsadmin reconfig 62 Administering Platform LSF
Chapter 3 Working with Your Cluster sbatchd LIM and RES Restarting sbatchd on a host does not affect jobs that are running on that host. If sbatchd is shut down, the host is not available to run new jobs. Existing jobs running on that host continue, but the results are not sent to the user until sbatchd is restarted. Jobs running on the host are not affected by restarting the daemons. If a daemon is not responding to network connections, lsadmin displays an error message with the host name. In this case you must kill and restart the daemon manually. If the LIM on the current master host is shut down, another host automatically takes over as master. If the RES is shut down while remote interactive tasks are running on the host, the running tasks continue but no new tasks are accepted. Administering Platform LSF 63
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
Page 5 and 6:
Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
Page 11 and 12: Contents 40 Non-Shared File Systems
Page 13 and 14: Welcome Contents ◆ “About This
Page 15 and 16: Welcome Command notation Notation M
Page 17 and 18: Welcome Platform LSF License Schedu
Page 19 and 20: Welcome Resource requirement specif
Page 21 and 22: Welcome Run-time enhancements Threa
Page 23 and 24: Welcome Environment variables ◆
Page 25 and 26: Welcome New files added to installa
Page 27 and 28: Technical Support Contact Platform
Page 29 and 30: C H A P T E R 1 About Platform LSF
Page 31 and 32: Chapter 1 About Platform LSF Job sl
Page 33 and 34: Chapter 1 About Platform LSF Master
Page 35 and 36: Chapter 1 About Platform LSF Master
Page 37 and 38: Chapter 1 About Platform LSF Host t
Page 39 and 40: Chapter 1 About Platform LSF Extern
Page 41 and 42: Chapter 1 About Platform LSF Job Li
Page 43 and 44: C H A P T E R 2 How the System Work
Page 45 and 46: Chapter 2 How the System Works Queu
Page 47 and 48: Chapter 2 How the System Works Disp
Page 49 and 50: Job Execution Environment Shared us
Page 51 and 52: Fault Tolerance Dynamic master host
Page 53: P A R T I Managing Your Cluster Con
Page 56 and 57: Viewing Cluster Information Viewing
Page 58 and 59: Default Directory Structures Defaul
Page 60 and 61: Default Directory Structures Window
Page 64 and 65: Controlling mbatchd Controlling mba
Page 66 and 67: Reconfiguring Your Cluster 3 Run ba
Page 68 and 69: Host States Host States Host states
Page 70 and 71: Viewing Host Information Viewing Ho
Page 72 and 73: Viewing Host Information type Viewi
Page 74 and 75: Controlling Hosts Controlling Hosts
Page 76 and 77: Adding a Host Adding a Host Use lsf
Page 78 and 79: Removing a Host Removing a Host CAU
Page 80 and 81: Adding and Removing Hosts Dynamical
Page 82 and 83: Adding and Removing Hosts Dynamical
Page 84 and 85: Adding Host Types and Host Models t
Page 86 and 87: Registering Service Ports NIS or NI
Page 88 and 89: Host Naming Host Naming Network add
Page 90 and 91: Hosts with Multiple Addresses Examp
Page 92 and 93: Host Groups Host Groups Where to us
Page 94 and 95: Tuning CPU Factors Tuning CPU Facto
Page 96 and 97: Handling Host-level Job Exceptions
Page 98 and 99: Handling Host-level Job Exceptions
Page 100 and 101: Queue States Queue States Queue sta
Page 102 and 103: Viewing Queue Information SCHEDULIN
Page 104 and 105: Controlling Queues Controlling Queu
Page 106 and 107: Controlling Queues Dispatch Windows
Page 108 and 109: Managing Queues Managing Queues Res
Page 110 and 111: Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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C H A P T E R 40 Non-Shared File Sy
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Chapter 40 Non-Shared File Systems
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Chapter 40 Non-Shared File Systems
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C H A P T E R 41 Error and Event Lo
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Chapter 41 Error and Event Logging
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System Event Log CAUTION Chapter 41
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Chapter 41 Error and Event Logging
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C H A P T E R 42 Troubleshooting an
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Common LSF Problems LIM dies quietl
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Chapter 42 Troubleshooting and Erro
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Setting Daemon Timing Levels Chapte
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P A R T IX LSF Utilities Contents
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About lstcsh About lstcsh The lstcs
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Local and Remote Modes Local and Re
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Differences from Other Shells Diffe
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Starting lstcsh Starting lstcsh Sta
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Host Redirection Host Redirection E
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Built-in Commands Built-in Commands
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Writing Shell Scripts in lstcsh Wri
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Index job migration 321 job requeue
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Index D daemons authd 496 authentic
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Index file spooling. See command fi
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Index Internet addresses, matching
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Index host locked 279 interactive j
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Index pre-42 UNIX directory structu
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Index disabling 317 job-level 317 q
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Index associating with hosts 155 Bo
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Index status closed in bhosts 70 jo
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Index 580 Administering Platform LS
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