Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

Index Internet addresses, matching with host names 88 Internet Domain Name Service (DNS), host naming 88 inter-queue priority 360 io load index 146 IRIX Comprehensive System Accounting (CSA), configuring 521 utmp file registration 413 it load index automatic job suspension 361 description 146, 405 suspending conditions 362 J %J substitution string in job arrays 335 JL/P parameter in lsb.users 262 JL/U parameter in lsb.hosts 262 job arrays %I substitution string 335 %J substitution string 335 argument passing 336 controlling 340 creating 332 dependency conditions 337 file preparation 334 format 332 history 338, 341 index list 332 input and output files 334 maximum size 333 monitoring 338, 341 overview 331 passing arguments 336 redirection of input and output 334 requeueing 341 specifying job slot limit 342 standard input and output 335 status 338, 341 submitting 332 syntax 332 job chunking. See chunk jobs job control actions CHKPNT 392 configuring 392 default actions 390 LS_EXEC_T 390 on Windows 391 overriding terminate interval 391 RESUME 391 SUSPEND 390 TERMINATE 391 terminating 393 using commands in 393 with lstcsh 557 job dependency conditions advanced 294 description 292 done 292 ended 292 examples 294 exit 292 external 293 job arrays 337 job name 293 post_done 293, 367 post_err 293, 367 post-processing 367 scheduling 290 specifying 290 specifying job ID 293 started 293 job dispatch order, fairshare 207 job email bsub options 506 disabling batch job notification 506 limiting size with LSB_MAILSIZE_LIMIT 507 job exception handling configuring 110 default eadmin action 109 exception types 109 viewing exception status with bjobs 116 viewing exceptions with bqueues 103 job execution environment 49 job exit rate exceptions configuring 96 description 96 viewing with bhosts 73 job file spooling See also command file spooling default directory 510 description 509 JOB_SPOOL_DIR parameter in lsb.params 509 job files 45 job groups controlling jobs 125 description 123 viewing 124 job idle factor, viewing with bjobs 116 job ladders. See batch jobs, pre-execution commands job limit 354 job migration automatic 321 checkpointable jobs 320 checkpointing 308 overview 320 requeuing jobs 321 job overrun exceptions configuring 110 description 109 viewing with bjobs 116 viewing with bqueuees 103 job preemption configuring 181 description 178 job slot limits 182 jobs with least run time 183 SLA scheduling 253 job requeue automatic 301 exclusive 303 reverse requeue 302 user-specified 304 job scripts 568 Administering Platform LSF
Index mpijob 434 writing for interactive jobs 410 job slot limits for job arrays 342 for parallel jobs 437 job spanning 190, 198 job starters augmentstarter 378 command-level 372 lic_starter script to manage software licenses 284 preservestarter 378 queue-level configuring 376 description 372 specifying command or script 374, 376 user commands 376 job states description 112 DONE description 112 post-execution commands 367 EXIT abnormal job termination 114 pre- and post-execution commands 367 PEND 112 POST_DONE 114, 367 POST_ERR 114, 367 post-execution 367 PSUSP 112 RUN 112 SSUSP 112 USUSP 112 WAIT for chunk jobs 327 job submission 44 JOB_ACCEPT_INTERVAL parameter in lsb.params 46 JOB_CONTROLS parameter in lsb.queues 392 JOB_EXIT_RATE_DURATION parameter in lsb.params 97 JOB_IDLE parameter in lsb.queues 110 JOB_OVERRUN parameter in lsb.queues 110 JOB_SCHEDULING_INTERVAL parameter in lsb.params 46 JOB_SPOOL_DIR parameter in lsb.params 509 JOB_STARTER parameter in lsb.queues 376 JOB_TERMINATE_INTERVAL parameter in lsb.params 353, 391 JOB_UNDERRUN parameter in lsb.queues 110 job-level checkpointing 316 pre-execution commands configuring 368 description 367 resource requirements 189 resource reservation 271 run limits 353 job-level suspending conditions, viewing 363 jobs changing execution order 117 checkpointing chunk jobs 328 manually 316 prerequisites 313 CHKPNT 392 dispatch order 47 email notification disabling 506 options 506 enabling rerun 305 enforcing memory usage limits 352 exclusive 175 forcing execution 119 interactive. See interactive jobs killing 121 limiting processors for parallel 447 making checkpointable 315 migrating automatically 321 migrating manually 320 optimum number running in SLA 241 pending 113 periodic checkpointing 317 preemption 360 preemptive and preemptable 178 PVM 433 requeueing 341 requeuing, description 304 requeuing migrating 321 rerunning 305 rerunning automatically 305 restarting automatically 305 checkpointed jobs 319 resuming 120, 364 sending specific signals to 122 short running 324 specifying options for interactive 410 specifying shell for interactive 412 spooling command and job files 410 spooling input, output, and command files 509 submitting to a job group 124 to a service class 241 suspended 364 suspending 120, 360 suspending at queue level 363 switching queues 118 viewing by user 115 configuration parameters in lsb.params 57 order in queue 47 jobs command in lstcsh 557 jobs requeue, description 300 K Kerberos authentication 494 kernel-level checkpointing 309 L lic_starter script, to manage software licenses 284 license, advance reservation 463 licenses cluster reconfiguration 66 software counted 280 dedicated queue for 282 floating 281 Administering Platform LSF 569
Page 1 and 2:
Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
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Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
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Contents 40 Non-Shared File Systems
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Welcome Contents ◆ “About This
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Welcome Command notation Notation M
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Welcome Platform LSF License Schedu
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Welcome Resource requirement specif
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Welcome Run-time enhancements Threa
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Welcome Environment variables ◆
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Welcome New files added to installa
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Technical Support Contact Platform
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C H A P T E R 1 About Platform LSF
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Chapter 1 About Platform LSF Job sl
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Host t
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Chapter 1 About Platform LSF Extern
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Chapter 1 About Platform LSF Job Li
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C H A P T E R 2 How the System Work
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Chapter 2 How the System Works Queu
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Chapter 2 How the System Works Disp
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Job Execution Environment Shared us
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Fault Tolerance Dynamic master host
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P A R T I Managing Your Cluster Con
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Viewing Cluster Information Viewing
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Default Directory Structures Defaul
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Default Directory Structures Window
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Controlling Daemons Controlling Dae
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Controlling mbatchd Controlling mba
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Reconfiguring Your Cluster 3 Run ba
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Host States Host States Host states
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Viewing Host Information Viewing Ho
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Viewing Host Information type Viewi
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Controlling Hosts Controlling Hosts
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Adding a Host Adding a Host Use lsf
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Removing a Host Removing a Host CAU
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Adding and Removing Hosts Dynamical
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Adding and Removing Hosts Dynamical
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Adding Host Types and Host Models t
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Registering Service Ports NIS or NI
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Host Naming Host Naming Network add
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Hosts with Multiple Addresses Examp
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Host Groups Host Groups Where to us
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Tuning CPU Factors Tuning CPU Facto
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Handling Host-level Job Exceptions
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Handling Host-level Job Exceptions
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Queue States Queue States Queue sta
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Viewing Queue Information SCHEDULIN
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Controlling Queues Controlling Queu
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Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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C H A P T E R 40 Non-Shared File Sy
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Chapter 40 Non-Shared File Systems
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Page 519 and 520: C H A P T E R 41 Error and Event Lo
Page 521 and 522: Chapter 41 Error and Event Logging
Page 523 and 524: System Event Log CAUTION Chapter 41
Page 525 and 526: Chapter 41 Error and Event Logging
Page 527 and 528: C H A P T E R 42 Troubleshooting an
Page 529 and 530: Common LSF Problems LIM dies quietl
Page 531 and 532: Chapter 42 Troubleshooting and Erro
Page 543 and 544: Setting Daemon Timing Levels Chapte
Page 545: P A R T IX LSF Utilities Contents
Page 548 and 549: About lstcsh About lstcsh The lstcs
Page 550 and 551: Local and Remote Modes Local and Re
Page 552 and 553: Differences from Other Shells Diffe
Page 554 and 555: Starting lstcsh Starting lstcsh Sta
Page 556 and 557: Host Redirection Host Redirection E
Page 558 and 559: Built-in Commands Built-in Commands
Page 560 and 561: Writing Shell Scripts in lstcsh Wri
Page 562 and 563: Index job migration 321 job requeue
Page 564 and 565: Index D daemons authd 496 authentic
Page 566 and 567: Index file spooling. See command fi
Page 570 and 571: Index host locked 279 interactive j
Page 572 and 573: Index pre-42 UNIX directory structu
Page 574 and 575: Index disabling 317 job-level 317 q
Page 576 and 577: Index associating with hosts 155 Bo
Page 578 and 579: Index status closed in bhosts 70 jo
Page 580: Index 580 Administering Platform LS
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