Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

Default Directory Structures Default Directory Structures UNIX The following diagram shows a typical directory structure for a new UNIX installation. Depending on which products you have installed and platforms you have selected, your directory structure may vary. LSF_TOP conf 1 work 2 3 log version 4 lsbatch 5 cluster_name configdir lsb.hosts lsb.params lsb.queues … license.dat lsf.cluster.cluster_name lsf.conf lsf.shared lsf.task profile.lsf cshrc.lsf Key directories files cluster_name logdir lsb.event.lock info lsf_indir lsf_cmdir man include misc lsf conf_tmpl examples make.def make.misc … install 6 8 lsbatch.h lsf.h 12 instlib scripts lsfinstall hostsetup ... bin aix4 badmin bjobs lsadmin … 1 2 3 4 5 6 7 8 9 10 11 12 7 lim res sbatchd … sparc-sol7-64 ... 9 etc 10 lib 11 locale uid ckpt_crt0.o libampi.a … LSF_CONFDIR = LSF_ENVDIR LSB_SHAREDIR LSF_LOGDIR LSF_VERSION LSB_CONFDIR LSF_MANDIR Machine-dependent directory LSF_INCLUDEDIR LSF_BINDIR LSF_SERVERDIR LSF_LIBDIR LSF_MISC 7 58 Administering Platform LSF
Chapter 3 Working with Your Cluster Pre-4.2 UNIX installation directory structure The following diagram shows a cluster installed with lsfsetup. It uses the pre-4.2 directory structure. Administering Platform LSF 59
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
Page 5 and 6:
Contents Part II: Working with Reso
Page 7 and 8: Contents 17 Reserving Resources . .
Page 9 and 10: Contents 30 External Job Submission
Page 11 and 12: Contents 40 Non-Shared File Systems
Page 13 and 14: Welcome Contents ◆ “About This
Page 15 and 16: Welcome Command notation Notation M
Page 17 and 18: Welcome Platform LSF License Schedu
Page 19 and 20: Welcome Resource requirement specif
Page 21 and 22: Welcome Run-time enhancements Threa
Page 23 and 24: Welcome Environment variables ◆
Page 25 and 26: Welcome New files added to installa
Page 27 and 28: Technical Support Contact Platform
Page 29 and 30: C H A P T E R 1 About Platform LSF
Page 31 and 32: Chapter 1 About Platform LSF Job sl
Page 33 and 34: Chapter 1 About Platform LSF Master
Page 35 and 36: Chapter 1 About Platform LSF Master
Page 37 and 38: Chapter 1 About Platform LSF Host t
Page 39 and 40: Chapter 1 About Platform LSF Extern
Page 41 and 42: Chapter 1 About Platform LSF Job Li
Page 43 and 44: C H A P T E R 2 How the System Work
Page 45 and 46: Chapter 2 How the System Works Queu
Page 47 and 48: Chapter 2 How the System Works Disp
Page 49 and 50: Job Execution Environment Shared us
Page 51 and 52: Fault Tolerance Dynamic master host
Page 53: P A R T I Managing Your Cluster Con
Page 56 and 57: Viewing Cluster Information Viewing
Page 60 and 61: Default Directory Structures Window
Page 62 and 63: Controlling Daemons Controlling Dae
Page 64 and 65: Controlling mbatchd Controlling mba
Page 66 and 67: Reconfiguring Your Cluster 3 Run ba
Page 68 and 69: Host States Host States Host states
Page 70 and 71: Viewing Host Information Viewing Ho
Page 72 and 73: Viewing Host Information type Viewi
Page 74 and 75: Controlling Hosts Controlling Hosts
Page 76 and 77: Adding a Host Adding a Host Use lsf
Page 78 and 79: Removing a Host Removing a Host CAU
Page 80 and 81: Adding and Removing Hosts Dynamical
Page 82 and 83: Adding and Removing Hosts Dynamical
Page 84 and 85: Adding Host Types and Host Models t
Page 86 and 87: Registering Service Ports NIS or NI
Page 88 and 89: Host Naming Host Naming Network add
Page 90 and 91: Hosts with Multiple Addresses Examp
Page 92 and 93: Host Groups Host Groups Where to us
Page 94 and 95: Tuning CPU Factors Tuning CPU Facto
Page 96 and 97: Handling Host-level Job Exceptions
Page 98 and 99: Handling Host-level Job Exceptions
Page 100 and 101: Queue States Queue States Queue sta
Page 102 and 103: Viewing Queue Information SCHEDULIN
Page 104 and 105: Controlling Queues Controlling Queu
Page 106 and 107: Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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Page 358 and 359:
CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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C H A P T E R 40 Non-Shared File Sy
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Chapter 40 Non-Shared File Systems
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Chapter 40 Non-Shared File Systems
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C H A P T E R 41 Error and Event Lo
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Chapter 41 Error and Event Logging
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System Event Log CAUTION Chapter 41
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Chapter 41 Error and Event Logging
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C H A P T E R 42 Troubleshooting an
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Common LSF Problems LIM dies quietl
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Chapter 42 Troubleshooting and Erro
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Page 543 and 544:
Setting Daemon Timing Levels Chapte
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P A R T IX LSF Utilities Contents
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About lstcsh About lstcsh The lstcs
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Local and Remote Modes Local and Re
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Differences from Other Shells Diffe
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Starting lstcsh Starting lstcsh Sta
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Host Redirection Host Redirection E
Page 558 and 559:
Built-in Commands Built-in Commands
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Writing Shell Scripts in lstcsh Wri
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Index job migration 321 job requeue
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Index D daemons authd 496 authentic
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Index file spooling. See command fi
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Index Internet addresses, matching
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Index host locked 279 interactive j
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Index pre-42 UNIX directory structu
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Index disabling 317 job-level 317 q
Page 576 and 577:
Index associating with hosts 155 Bo
Page 578 and 579:
Index status closed in bhosts 70 jo
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Index 580 Administering Platform LS
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Administering Platform LSF - SAS

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