Administering Platform LSF - SAS

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$Intel(R) Math Kernel Library for Linux* OS User's Guide$

Index pre-42 UNIX directory structure 59 LSF_USE_HOSTEQUIV parameter in lsf.conf 500 .lsfhosts file 503 lsfinstall, adding a host 76 lsfshutdown command, shutting down daemons on all hosts 62 lsfstartup command, starting daemons on all hosts 62 lshosts command, DEFAULT host model or type 532 LSLIB (Load Sharing LIBrary), initializing for privileged ports authentication 496 lspasswd command 499 lsrcp command description 516 executable file location 518 file transfer 518 restrictions 518 lstcsh about 548 difference from other shells 552 exiting 554 limitations 553 local mode 550 remote mode 550 resource requirements 549 starting 554 task lists 549 using as login shell 555 writing shell scripts in 560 M mail disabling batch job notification 506 job options 506 limiting the size of job email 507 mandatory esub method (LSB_ESUB_METHOD) 386 mandatory first execution host, parallel jobs 439 mapping user accounts 503 master esub (mesub) configuring 387 description 386 master host candidates with SF_MASTER_LIST 487 in non-shared file systems 515 preselecting 487 specifying 525 viewing current 56 MAX_JOB_NUM parameter in lsb.params 523 MAX_JOBS parameter in lsb.users 262 maximum number of processors for parallel jobs 438 resource usage limit 348 run limit 348 maxmem static resource 148 maxswp static resource 148 maxtmp static resource 148 mbatchd (master batch daemon) expiry time 491 refresh time 491 restarting 64 shutting down 64 specifying query-dedicated port 491 specifying time interval for forking child 491 tuning on UNIX 491 mbatchd.log.host_name file 522 MBD. See mbatchd mbddebug command 541 mbdrestart badmin command 62 mbdtime command 543 mbschd.log.host_name file 522 mem load index 146 MEMLIMIT parameter in lsb.queues 352 memory available 146 usage limit 352 mesub (master esub) configuring 387 description 386 migration. See job migration minimum processors for parallel jobs 438 missed SLA scheduling goals, control action 253 model static resource 148 MPI (Message Passing Interface) 431, 434 MPICH support 434 mpijob parallel job script 434 MPL (Message Passing Library) 434 multi-homed hosts 89 multiple, esub 386 multiple authentication environments 502 multiprocessor hosts configuring queue-level load thresholds 363 tuning LIM 486 multithreading, configuring mbatchd for 491 MXJ parameter in lsb.hosts 262 N name lookup using /etc/hosts file 88 name spaces, non-uniform 503 native language system, and lstcsh 553 ncpus static resource dynamically changing processors 149 reported by LIM 148 ndisks static resource 148 network failure 51 interfaces 89 partitioning, and duplicate event logging 525 port numbers, configuring for NIS or NIS+ databases 86 Network File System. See NFS Network Information Service. See NIS NFS (Network File System) automount command 514, 528 nosuid option 499 overview 514 NIS (Network Information Service) configuring port numbers 86 host name lookup in LSF 88 ypcat hosts.byname 88 NO_PREEMPT_FINISH_TIME parameter in lsb.params 183 572 Administering Platform LSF
Index NO_PREEMPT_RUN_TIME parameter in lsb.params 183 non-normalized run time limit 354 non-shared file systems, installing LSF 515 non-uniform name spaces 503 normalization CPU time limit 357 host 357 run time limit 357 normalization host 351 normalized run queue length description 145 tuning LIM 486 nosuid option, NFS mounting 499 NQS (Network Queueing System), logging events on Cray UNICOS 520 nqsacct file 520 number of processors for parallel jobs 438 numdone dependency condition 337 numended dependency condition 337 numerical resources 140 numexit dependency condition 337 numhold dependency condition 337 numpend dependency condition 337 numrun dependency condition 337 numstart dependency condition 337 O obsolete parameters, USER_ADVANCE_RESERVATION in lsb.params 464 official host name 88 -ok host status lsload command 69 status load index 144 ok host status bhosts command 68 lsload command 69 status load index 144 one-time advance reservation 466 order of job execution,changing 117 order string 194 OS memory limit 353 output and input files, for job arrays 335 output file spooling, default directory 510 overrun job exceptions configuring 110 description 109 viewing with bjobs 116 viewing with bqueuees 103 ownership of log directory 520 P P4 jobs 431, 433 p4job parallel job script 433 paging rate automatic job suspension 361 checking 362 description 145, 405 load index 145 suspending conditions 362 parallel fairshare 458 parallel jobs allocating processors 432 backfill scheduling 453 deadline constraint scheduling 459 fairshare 458 job slot limits 437 limiting processors 447 locality 198, 441 mandatory first execution host 439 mpijob script 434 number of processors 438 overview 429 processor reservation 450 selecting hosts with same string 199 spanning hosts 441 submitting 432 using makefile 446 parallel programming Argonne National Laboratory 434 Mississippi State University 434 Oak Ridge National Laboratory 433 P4 433 packages 431 PVM 433 parallel tasks running with lsgrun 417 starting 436 Parallel Virtual Machine (PVM) job scripts 431 submitting jobs to LSF 433 parameters. See individual parameter names 57 partitioned networks 52 PATH environment variable and lstcsh 554 shared user directories 50 paths /etc/hosts file example host entries 90 host naming 88 name lookup 88 /etc/hosts.equiv file 500 host authentication 500 using rcp 518 /etc/lsf.sudoers file 495 /etc/services file, adding LSF entries to 85 /net 516 /usr/bin/ 50 PEND, job state 112 pending reasons, queue-level resource reservation 271 pending reasons, viewing 113 performance tuning busy thresholds 484 LIM policies 483 load indices 484 load thresholds 485 mbatchd on UNIX 491 preselecting master hosts 487 run windows for LIM 483 periodic checkpointing description 317 Administering Platform LSF 573
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Administering Platform LSF® Versio
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Contents Welcome . . . . . . . . .
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Contents Part II: Working with Reso
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Contents 17 Reserving Resources . .
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Contents 30 External Job Submission
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Contents 40 Non-Shared File Systems
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Welcome Contents ◆ “About This
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Welcome Command notation Notation M
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Welcome Platform LSF License Schedu
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Welcome Resource requirement specif
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Welcome Run-time enhancements Threa
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Welcome Environment variables ◆
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Welcome New files added to installa
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Technical Support Contact Platform
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C H A P T E R 1 About Platform LSF
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Chapter 1 About Platform LSF Job sl
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Master
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Chapter 1 About Platform LSF Host t
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Chapter 1 About Platform LSF Extern
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Chapter 1 About Platform LSF Job Li
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C H A P T E R 2 How the System Work
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Chapter 2 How the System Works Queu
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Chapter 2 How the System Works Disp
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Job Execution Environment Shared us
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Fault Tolerance Dynamic master host
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P A R T I Managing Your Cluster Con
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Viewing Cluster Information Viewing
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Default Directory Structures Defaul
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Default Directory Structures Window
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Controlling Daemons Controlling Dae
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Controlling mbatchd Controlling mba
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Reconfiguring Your Cluster 3 Run ba
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Host States Host States Host states
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Viewing Host Information Viewing Ho
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Viewing Host Information type Viewi
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Controlling Hosts Controlling Hosts
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Adding a Host Adding a Host Use lsf
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Removing a Host Removing a Host CAU
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Adding and Removing Hosts Dynamical
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Adding and Removing Hosts Dynamical
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Adding Host Types and Host Models t
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Registering Service Ports NIS or NI
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Host Naming Host Naming Network add
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Hosts with Multiple Addresses Examp
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Host Groups Host Groups Where to us
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Tuning CPU Factors Tuning CPU Facto
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Handling Host-level Job Exceptions
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Handling Host-level Job Exceptions
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Queue States Queue States Queue sta
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Viewing Queue Information SCHEDULIN
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Controlling Queues Controlling Queu
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Controlling Queues Dispatch Windows
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Managing Queues Managing Queues Res
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Handling Job Exceptions Configuring
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Job States Job States The bjobs com
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Job States Viewing wait status and
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Viewing Job Information Viewing exc
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Switching Jobs from One Queue to An
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Suspending and Resuming Jobs Suspen
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Sending a Signal to a Job Sending a
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Using Job Groups Creating a job gro
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Using Job Groups % bhist -l 105 You
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Viewing User and User Group Informa
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About User Groups About User Groups
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LSF User Groups LSF User Groups You
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LSF User Groups 134 Administering P
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C H A P T E R 8 Understanding Resou
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Chapter 8 Understanding Resources T
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Chapter 8 Understanding Resources S
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How LSF Uses Resources Viewing job
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Chapter 8 Understanding Resources S
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Chapter 8 Understanding Resources V
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Chapter 8 Understanding Resources A
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C H A P T E R 9 Adding Resources Co
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Adding New Resources to Your Cluste
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Chapter 9 Adding Resources Configur
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Static Shared Resource Reservation
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Chapter 9 Adding Resources Configur
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Chapter 9 Adding Resources ELIM res
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Modifying a Built-In Load Index Con
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P A R T III Scheduling Policies Con
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Specifying Time Values Specifying T
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Specifying Time Expressions Specify
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Automatic Time-based Configuration
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Deadline Constraint Scheduling Dead
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Exclusive Scheduling 176 Administer
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About Preemptive Scheduling About P
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How Preemptive Scheduling Works Job
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Configuring Preemptive Scheduling Q
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Configuring Preemptive Scheduling 1
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About Resource Requirements About R
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Queue-Level Resource Requirements V
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About Resource Requirement Strings
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Selection String Selection String S
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Order String Order String Syntax De
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Usage String Example rusage[mem=50:
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Span String Span String Syntax A sp
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Same String 200 Administering Platf
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About Fairshare Scheduling About Fa
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User Share Assignments Examples ◆
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Dynamic User Priority Default dynam
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Host Partition Fairshare Host Parti
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Queue-Level User-based Fairshare Qu
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Cross-queue Fairshare bqueues -l al
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Cross-queue Fairshare 3 In all the
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Hierarchical Fairshare Viewing hier
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Queue-based Fairshare Queue-based F
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Configuring Slot Allocation per Que
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Viewing Queue-based Fairshare Alloc
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Typical Slot Allocation Scenarios T
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Typical Slot Allocation Scenarios W
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Typical Slot Allocation Scenarios T
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Using Historical and Committed Run
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Using Historical and Committed Run
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Users Affected by Multiple Fairshar
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Ways to Configure Fairshare Ways to
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Ways to Configure Fairshare Example
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Using Goal-Oriented SLA Scheduling
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Using Goal-Oriented SLA Scheduling
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Configuring Service Classes for SLA
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Viewing Information about SLAs and
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Viewing Information about SLAs and
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Understanding Service Class Behavio
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C H A P T E R 16 Resource Allocatio
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Chapter 16 Resource Allocation Limi
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C H A P T E R 17 Reserving Resource
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources Usin
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Chapter 17 Reserving Resources View
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C H A P T E R 18 Managing Software
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Host Locked Licenses Chapter 18 Man
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Network Floating Licenses Chapter 1
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Chapter 18 Managing Software Licens
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C H A P T E R 19 Dispatch and Run W
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Run Windows Configuring run windows
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C H A P T E R 20 Job Dependencies C
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Chapter 20 Job Dependencies ◆ In
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Chapter 20 Job Dependencies externa
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C H A P T E R 21 Job Priorities Con
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Chapter 21 Job Priorities Specifyin
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C H A P T E R 22 Job Requeue and Jo
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Chapter 22 Job Requeue and Job Reru
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C H A P T E R 23 Job Checkpoint, Re
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Approaches to Checkpointing Kernel-
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Chapter 23 Job Checkpoint, Restart,
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Checkpointing a Job Prerequisites C
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Making Jobs Checkpointable Manually
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Enabling Periodic Checkpointing At
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Restarting Checkpointed Jobs Requir
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Chapter 23 Job Checkpoint, Restart,
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C H A P T E R 24 Chunk Job Dispatch
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Chapter 24 Chunk Job Dispatch Confi
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Submitting and Controlling Chunk Jo
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Chapter 24 Chunk Job Dispatch Fairs
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C H A P T E R Ë 25 Job Arrays LSF
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Chapter 25 Job Arrays Maximum size
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Redirecting Standard Input and Outp
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Chapter 25 Job Arrays Job Array Dep
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Chapter 25 Job Arrays Specific job
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Requeuing a Job Array Chapter 25 Jo
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P A R T V Controlling Job Execution
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About Resource Usage Limits About R
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Specifying Resource Usage Limits Sp
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Specifying Resource Usage Limits If
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Supported Resource Usage Limits and
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CPU Time and Run Time Normalization
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Automatic Job Suspension Automatic
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Suspending Conditions Suspending Co
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Suspending Conditions Viewing suspe
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About Pre-Execution and Post-Execut
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Configuring Pre- and Post-Execution
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Configuring Pre- and Post-Execution
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About Job Starters About Job Starte
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Command-Level Job Starters Command-
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Queue-Level Job Starters Queue-Leve
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Controlling Execution Environment U
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Understanding External Executables
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Using esub Option LSB_SUB_EXCEPTION
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Using esub General esub logic Rejec
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Using esub # Deny userC the ability
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Working with eexec Working with eex
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Default Job Control Actions Default
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Configuring Job Control Actions Con
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Configuring Job Control Actions Exa
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Customizing Cross-Platform Signal C
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C H A P T E R 32 Interactive Jobs w
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Chapter 32 Interactive Jobs with bs
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Interactive Batch Job Messaging Lim
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Running X Applications with bsub Ch
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C H A P T E R 33 Running Interactiv
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Chapter 33 Running Interactive and
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Interactive Tasks Chapter 33 Runnin
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P A R T VII Running Parallel Jobs C
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How LSF Runs Parallel Jobs How LSF
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Submitting Parallel Jobs Submitting
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Submitting MPI Jobs Submitting MPI
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Starting Parallel Tasks with LSF Ut
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Specifying a Minimum and Maximum Nu
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Specifying a Mandatory First Execut
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Controlling Processor Allocation Ac
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Running Parallel Processes on Homog
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Using LSF Make to Run Parallel Jobs
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Limiting the Number of Processors A
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Reserving Processors Reserving Proc
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Reserving Memory for Pending Parall
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Allowing Jobs to Use Reserved Job S
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Allowing Jobs to Use Reserved Job S
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Parallel Fairshare Parallel Fairsha
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Optimized Preemption of Parallel Jo
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About Advance Reservation About Adv
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Configuring Advance Reservation ◆
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Using Advance Reservation Adding a
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Using Advance Reservation Removing
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Using Advance Reservation 6:10 0 10
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Using Advance Reservation Modifying
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Using Advance Reservation 474 Admin
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C H A P T E R 36 Event Generation C
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Chapter 36 Event Generation Events
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C H A P T E R 37 Tuning the Cluster
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Adjusting LIM Parameters RUNWINDOW
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Chapter 37 Tuning the Cluster Compa
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Changing Default LIM Behavior to Im
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Chapter 37 Tuning the Cluster Whene
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Tuning mbatchd on UNIX Operating sy
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C H A P T E R 38 Authentication Con
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Chapter 38 Authentication eauth -c
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Chapter 38 Authentication How LSF d
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Chapter 38 Authentication Correctin
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Chapter 38 Authentication About Dae
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User Account Mapping Chapter 38 Aut
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C H A P T E R 39 Job Email, and Job
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Chapter 39 Job Email, and Job File
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C H A P T E R 40 Non-Shared File Sy
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Chapter 40 Non-Shared File Systems
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Chapter 40 Non-Shared File Systems
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C H A P T E R 41 Error and Event Lo
Page 521 and 522: Chapter 41 Error and Event Logging
Page 523 and 524: System Event Log CAUTION Chapter 41
Page 525 and 526: Chapter 41 Error and Event Logging
Page 527 and 528: C H A P T E R 42 Troubleshooting an
Page 529 and 530: Common LSF Problems LIM dies quietl
Page 531 and 532: Chapter 42 Troubleshooting and Erro
Page 543 and 544: Setting Daemon Timing Levels Chapte
Page 545: P A R T IX LSF Utilities Contents
Page 548 and 549: About lstcsh About lstcsh The lstcs
Page 550 and 551: Local and Remote Modes Local and Re
Page 552 and 553: Differences from Other Shells Diffe
Page 554 and 555: Starting lstcsh Starting lstcsh Sta
Page 556 and 557: Host Redirection Host Redirection E
Page 558 and 559: Built-in Commands Built-in Commands
Page 560 and 561: Writing Shell Scripts in lstcsh Wri
Page 562 and 563: Index job migration 321 job requeue
Page 564 and 565: Index D daemons authd 496 authentic
Page 566 and 567: Index file spooling. See command fi
Page 568 and 569: Index Internet addresses, matching
Page 570 and 571: Index host locked 279 interactive j
Page 574 and 575: Index disabling 317 job-level 317 q
Page 576 and 577: Index associating with hosts 155 Bo
Page 578 and 579: Index status closed in bhosts 70 jo
Page 580: Index 580 Administering Platform LS
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