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Index 314free format, 42functions of variance components, 38,170correlation, 173heritability, 172linear combinations, 171syntax, 171G structure, 106definition lines, 115, 120header, 120more than one term, 135Gamma distribution, 98Generalized Linear Models, 96geneticdata, 2groups, 152links, 149models, 149qualifiers, 149relationships, 150GIV, 154GLMM, 99graphics options, 181half-sib analysis, 293help via email, 4heritability, 172, 209heterogeneityerror variance, 9identifiable, 16IID, 7inbreeding coefficients, 152, 194Incremental Wald F Statistics, 20information matrixexpected, 13observed, 13initial values, 119input file extension.BIN, 44.DBL, 44.bin, 42, 44.csv, 43.dbl, 42, 44.pin, 171interactions, 90Introduction , 19isotropiccovariance model, 10job controloptions, 183qualifiers, 63key output files, 190likelihoodlog residual, 12residual, 12longitudinal data, 2balanced example, 284marginal distribution, 12Matérn variance structure, 129measurement error, 112MET, 9meta analysis, 2, 9missing values, 43, 94, 101, 195NA, 43in explanatory variables, 101in response, 101mixedeffects, 7model, 7mixed model, 7equations, 14multivariate, 143specifying, 32modelanimal, 149, 302correlation, 10covariance, 11
Index 315formulae, 83random regression, 11sire, 149model building, 139moving average, 93multi-environment trial, 2, 9multivariate analysis, 142, 278example, 292half-sib analysis, 293Nebraska Intrastate Nursery, 27Negative binomial distribution, 98non singular matrices, 106nonidentifiable, 16objective function, 14observed information matrix, 13operators, 85optionscommand line, 179ordering of terms, 102orthogonal polynomials, 94outliers, 210outputfiles, 35multivariate analysis, 145objects, 209output file extension.aov, 189, 196.apj, 189.asl, 189.asp, 189.asr, 35, 189, 190.dbr, 189.dpr, 189, 199.pvc, 189.pvs, 189, 199.res, 189, 200.rsv, 189, 205.sln, 37, 189, 193.spr, 189.tab, 189, 207.veo, 189.vrb, 207.vvp, 189, 208.yht, 38, 189, 195overspecified, 16own models, 132OWN variance structure, 131!F2, 132!T, 132parameterscale, 7variance, 7PathDOPATH, 187PATH, 187PC environment, 177pedigree, 149file, 150power, 129Predict!TP, 164!TURNINGPOINTS, 164$TP, 95PLOT suboptions, 165PRWTS, 167predicted values, 38prediction, 33, 157qualifiers, 162predictionsestimable, 39prior mean, 15productdirect, 9qualifier!UpArrow, 53!
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ASRemlUser GuideRelease 2.0A R Gilm
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Published by:E-mail:Website:VSN Int
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PrefaceiiASReml is one of several u
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ContentsPrefaceiList of TablesxviiL
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Contentsvi3.3 The ASReml data file
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ContentsviiiCombining rows from sep
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Contentsx7.6 Variance structure qua
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Contentsxii12.2 The command line .
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Contentsxiv15 Examples 24115.1 Intr
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List of Tablesxvi7.3 Details of the
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List of Figuresxix15.8 Rice bloodwo
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1 Introduction 21.1 What ASReml can
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1 Introduction 41.4 How to use this
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2 Some theoryThe linear mixed model
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2 Some theory 8laid out in a rectan
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2 Some theory 10product of matrices
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2 Some theory 12where H = R + ZGZ
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2 Some theory 14where y i is the
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2 Some theory 162.4 Combining varia
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2 Some theory 18balanced one-way cl
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2 Some theory 20L, r × p, and l, r
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2 Some theory 22the terms A, B, C,
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2 Some theory 24Kenward and Roger A
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3 A guided tourIntroductionNebraska
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3 A guided tour 28column rectangula
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3 A guided tour 30(see Chapter 2) t
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3 A guided tour 32els. Similarly fo
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3 A guided tour 34mand to run nin89
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3 A guided tour 36* SYNTAX change:
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3 A guided tour 38repl 3 -0.8713 1.
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3 A guided tour 40title linenin all
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4 Data file preparation 424.1 Intro
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4 Data file preparation 44Fixed for
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5 Command file: Reading the data 46
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6 Command file: Specifying theterms
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6 Command file: Specifying the term
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7 Command file: Specifying variance
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8 Command file: Multivariate analys
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9 Command file: Genetic analysisInt
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9 Command file: Genetic analysis 15
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10 Tabulation of the data andpredic
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10 Tabulation of the data and predi
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11 Functions of variancecomponentsI
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11 Functions of variance components
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11 Functions of variance components
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12 Command file: Running the jobInt
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12 Command file: Running the job 17
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13 Description of output filesIntro
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13 Description of output files 190A
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13 Description of output files 192i
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13 Description of output files 194f
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13 Description of output files 196.
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13 Description of output files 198o
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13 Description of output files 200E
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13 Description of output files 202t
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13 Description of output files 204|
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NIN alliance trial 1989 9a 1Residua
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13 Description of output files 208w
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13 Description of output files 210T
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14 Error messagesIntroductionCommon
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14 Error messages 214filename!last
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14 Error messages 216variety !AQUAL
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14 Error messages 2188. misspelt va
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14 Error messages 220Missing/faulty
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14 Error messages 222Last line read
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14 Error messages 224Model specific
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14 Error messages 226:11 column 11
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14 Error messages 22814.5 Informati
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14 Error messages 230List of warnin
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14 Error messages 232Alphabetical l
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15 Examples 24215.1 IntroductionIn
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15 Examples 244For simple variance
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15 Examples 2460.2_cwt Marvellous 1
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15 Examples 248The input file conta
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15 Examples 250Source Model terms G
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15 Examples 252ltage example 5−3
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15 Examples 254The focus is modelli
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15 Examples 256y1 y3 y5 y7 y10 ~ Tr
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15 Examples 258power model shown in
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15 Examples 260Residual US=UnStr 2
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15 Examples 262the current model).
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Page 288 and 289: 15 Examples 266Predicted values of
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Page 292 and 293: Tullibigeal trial i2 1Variogram of
Page 294 and 295: 15 Examples 272column evaluated at
Page 296 and 297: 15 Examples 274this is for the pair
Page 298 and 299: 15 Examples 276Table 15.8: Estimate
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Page 304 and 305: 15 Examples 282Interpretation of re
Page 306 and 307: 15 Examples 284The independence of
Page 308 and 309: 15 Examples 286Note that the data f
Page 310 and 311: 15 Examples 288Table 15.11 Orange d
Page 312 and 313: 15 Examples 290217Predicted values
Page 314 and 315: 15 Examples 292105Residual0-5-10200
Page 316 and 317: 15 Examples 294Table 15.13: REML es
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Page 322 and 323: 15 Examples 300Eigen values 4.382 0
Page 324 and 325: 15 Examples 302Animal modelIn this
Page 326 and 327: 15 Examples 304additive genetic var
Page 328 and 329: BibliographyAbramowitz, M. and Steg
Page 330 and 331: Bibliography 308Gilmour, A. R., Cul
Page 332 and 333: Bibliography 310Schall, R. (1991).
Page 334 and 335: IndexABORTASR.NOW, 65FINALASR.NOW,
Page 338 and 339: Index 316!==, 53!>, 53!>=, 53!*, 53
Page 340 and 341: Index 318!STEP, 71!SUBSET, 71!SUB,
Page 342: Index 320parameter, 7variance compo
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