Symbiotic Fungi: Principles and Practice (Soil Biology)

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428 Index Nitrate net uptake, 83 Nitrogen (N), 285 NLFA 16:15, 279, 281 15 N natural abundance, 286, 290 NO3 availability, 85 Nonself incompatibility, 56 Nostoc punctiforme, 13 Notothylas, 15 %Ntransfer, 288 Nuclear magnetic resonance (NMR) spectroscopy, 399–400 Nuclei, 55 Nucleotides, 180 O Oomycete, 142 Orchidaceous mycorrhizal fungi, 401 Ozone, 314 P Paenibacillus, 149 Palynology, 168 Paraglomus, 19 Parasitism, 1 Pasteurization, 310 Pasteur pipette, 167 Pathogens, 143, 340 PBS, 92 PCR-DGGE, 147 PCR target, 178–179 Pectinases, 8 Penicillium, 417 Peribacteroid membrane, 10 Petroselinum crispum, 323 PEX extraction, 173 Phalloid, 163 Phenetics, 183 Phenolic, 136 Phenylalanine ammonia lyase (PAL) enzyme assay, 370 Phialocephala fortinii, 400 Phosphatase, 89 acid, 89 activity, 90 alkaline, 89 inhibitor, 92 Phospholipid fatty acid (PLFA), 276 Phospholipids, 279 Phosphorus, 101 Photoluminescence, 130 Phycobiont, 15 Phylobacteriaceae, 5 Phylogenetic, 162 Phylogenetic placement, 183–184 Phylogenetic trees, 182 Phylograms, 183 Physical interactions, 148 Phytophthora nicotianae, 142 Pinaceae, 19 Pinus pinaster, 83 Piriformospora, 383–387, 389 P. indica, 21, 23, 24, 160, 364, 365, 385, 386, 389, 391 Plant activators, 352 Plantago lanceolata, 277 Plant cell culture, 363, 364 Plant growth-promoting rhizobacteria (PGPR), 340–342, 345 Plant hormone, 381 Plant-microbe interactions, 3 Pleurotus ostreatus, 417 Podophyllotoxin, 369 Polyacrylamide gel, 180 Polyamines, 179 Polyethylene glycol, 178 Polygalactouronases, 8 Polygenomic extractions, 178 Polymerase chain reaction, 162 Polyploid, 8 Potassium net uptake, 83 Predicting mycorrhiza formation, 45 Preparation of combined glutaraldehydeformaldehyde fixative, 220 Preparation of elicitors, 376–378 Preservation, 169–170 Primary fluorescence, 130 (AU: Coded as Primary fluorescence. Vease autofluorescence in chapter 8) Primers, 178 Primordium, 9 Proline, 145 Propylene oxide (C3H6O), 312 Protein identification strategies, 250–251 Proteobacteria, 5
Index 429 Proteomics, 244 Protoplasmic continuity, 52 Protoplasting, 418 Protoplasts, 168 Psalliota campestris, 406 Psalliota hortensis, 406 Pseudomonas, 339 Pseudomonas, 147 P. fluorescens, 200 Pulse-labelling, 277 Pyrenomycetes, 170 Pythium, 149 R Random amplified polymorphic DNA, 415–416 RAPDs, 414 Reagents for culture, 201–202 Recombinant DNA technology, 416 References, 379–380 Restoration, 294, 295 Restriction fragment length polymorphism (RFLP), 414–416 Reverse complemented, 182 Reversed phase columns, 398 Reverse transcription, 32 Rhicadhesin, 7 Rhizobia, 1, 5–10 Rhizobiaceae, 5 Rhizobium, 3–5, 7 R. japonicum, 4 R. leguminosarum, 4, 6 R. lupinii, 4 Rhizobium–legume complex, 15 Rhizoctonia, 21, 401 Rhizoferrins, 394, 396 Rhizopogon roseolus, 83 Rhizosphere, 3, 6, 147, 160, 197, 275, 323 Rhizosphere bacteria, 278, 280 Rhizotron, 167 RNA extraction, 32 Root architecture, 382, 392 Root branching, 381, 385, 386, 391 Root exudates, 2, 46, 142 Root exudation, 145 Root handling, 245–246 Root length, 43 Root necrosis, 150 Root-organ cultures (ROC), 105–109 Rubiaceae, 6 S Salicaceae, 19 Sample preparation, 125–127 intraradical fungal structures, 126 root sections, 125 spores, 127 whole roots, 125 Saprophytic soil microorganisms, 164 (AU: Found as saprobic soil microorganisms in text, coded as Saprophytic soil microorganisms. Please confirm which is correct) Schizophyllum commune, 417 Sclerotization, 169 Scutellospora, 19, 281 Seasonal and spatial variations, 46 Secondary fluorescence, 130 Separation of ferric hydroxamates, 398–399 Sequencing, 180–181 Sequencing of DNA, 162 Sesbania rostrata, 5 Siderophores, 393 Single nucleotide polymorphisms, 181 Sinorhizobium, 5 Small variations, 81 Soil aggregation, 41, 159 Soil dilution, 165–166 Soil disturbance, 313 Soil infectivity, 42 Soil-organic C, 282 Solarization, 308 Spermidine, 179 Spilanthes calva, 23 Spore prints, 162 Spores, 149, 160 Sporophores, 160, 164–166 Stable carbon (C) isotope, 275 Stable or radio-isotopic tracer, 117 Stable voltage, 80 Stachydrines, 6 Starter inoculum, 321 Steam sterilization, 310 Sterigmata, 405
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Soil Biology Volume 18 Series Edito
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Ajit Varma l Amit C. Kharkwal Edito
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Foreword So old, so new... More tha
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Foreword vii Little AE, Robinson CJ
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x Preface work in this challenging
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xii Contents 9 Role of Root Exudate
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Contributors L.K. Abbott School of
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Contributors xvii Falko Feldmann Ju
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Contributors xix K. Nara Asian Natu
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Contributors xxi Marc St-Arnaud Ins
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2 A. Das and A. Varma Fig. 1.1 Type
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4 A. Das and A. Varma the scientifi
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6 A. Das and A. Varma 1.3.2 Symbiot
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8 A. Das and A. Varma all the root
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10 A. Das and A. Varma 1. Such poly
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12 A. Das and A. Varma 1.3.3.9 Nitr
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14 A. Das and A. Varma about 1-2 mm
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16 A. Das and A. Varma fixed nitrog
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18 A. Das and A. Varma Mycorrhizae
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20 A. Das and A. Varma Fig. 1.6 Dia
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22 A. Das and A. Varma a b Root hai
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24 A. Das and A. Varma intracellula
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26 A. Das and A. Varma Becker A, Ni
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28 A. Das and A. Varma Trappe JM, B
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30 A. Jumpponen were once active in
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32 A. Jumpponen GA, USA) to avoid d
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34 A. Jumpponen 2.2.3.6 Cloning, Se
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36 A. Jumpponen Table 2.1 Fungi det
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38 A. Jumpponen of the community st
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40 A. Jumpponen Girvan MS, Bullimor
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42 I.A.F. Djuuna et al. 1991). Crop
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44 I.A.F. Djuuna et al. 3.2.2 Indir
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46 I.A.F. Djuuna et al. Mycorrhiza
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48 I.A.F. Djuuna et al. Boomsma CR,
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50 I.A.F. Djuuna et al. Saito M (19
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52 M. Giovannetti et al. evidenced
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54 M. Giovannetti et al. a c e Ster
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56 M. Giovannetti et al. 4.2.4 Rema
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58 M. Giovannetti et al. a b c Fig.
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60 M. Giovannetti et al. to 4.1 mm
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62 M. Giovannetti et al. The detect
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64 M. Giovannetti et al. Jones MD,
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66 A. Gobert and C. Plassard NO3 fl
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68 A. Gobert and C. Plassard After
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70 A. Gobert and C. Plassard with k
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72 A. Gobert and C. Plassard 10 9 2
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74 A. Gobert and C. Plassard Fig. 5
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76 A. Gobert and C. Plassard connec
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78 A. Gobert and C. Plassard any ti
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80 A. Gobert and C. Plassard Net fl
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82 A. Gobert and C. Plassard a Rati
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84 A. Gobert and C. Plassard - upta
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86 A. Gobert and C. Plassard Table
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88 A. Gobert and C. Plassard Newman
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90 I.M. van Aarle as mycorrhizal hy
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92 I.M. van Aarle a wash buffer. Th
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94 I.M. van Aarle l Usually 20-50 m
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96 I.M. van Aarle Fig. 6.1 Extramat
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98 I.M. van Aarle A disadvantage of
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Chapter 7 In Vitro Compartmented Sy
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7 In Vitro Compartmented Systems to
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Chapter 8 Use of the Autofluorescen
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8 Use of the Autofluorescence Prope
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Chapter 9 Role of Root Exudates and
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9 Role of Root Exudates and Rhizosp
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Chapter 10 Assessing the Mycorrhiza
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10 Assessing the Mycorrhizal Divers
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178 D. Krüger et al. 8. Wash the p
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180 D. Krüger et al. Table 10.1 Ty
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182 D. Krüger et al. appear are in
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184 D. Krüger et al. tool such as
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186 D. Krüger et al. Ishikawa J, T
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188 D. Krüger et al. Sammeth M, Ro
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190 Z.M. Solaiman hyphae have been
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192 Z.M. Solaiman 11.2.2 Isolation
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194 Z.M. Solaiman 11.3 Conclusions
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Chapter 12 Interaction with Soil Mi
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12 Interaction with Soil Microorgan
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Chapter 13 Isolation, Cultivation a
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13 Isolation, Cultivation and In Pl
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228 K. Vogel-Mikusˇ et al. only be
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230 K. Vogel-Mikusˇ et al. Fig. 14
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232 K. Vogel-Mikusˇ et al. such sp
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234 K. Vogel-Mikusˇ et al. STIM de
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236 K. Vogel-Mikusˇ et al. transfe
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Table 14.1 Element concentrations w
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240 K. Vogel-Mikusˇ et al. Fig. 14
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242 K. Vogel-Mikusˇ et al. Frey B,
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244 E. Dumas-Gaudot et al. TEMED N,
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246 E. Dumas-Gaudot et al. system i
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248 E. Dumas-Gaudot et al. Bromophe
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250 E. Dumas-Gaudot et al. taken to
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252 E. Dumas-Gaudot et al. Note 6:
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254 E. Dumas-Gaudot et al. by Bradf
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256 E. Dumas-Gaudot et al. 3. Take
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258 E. Dumas-Gaudot et al. solubili
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260 E. Dumas-Gaudot et al. Table 15
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262 E. Dumas-Gaudot et al. Table 15
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264 E. Dumas-Gaudot et al. Followin
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266 E. Dumas-Gaudot et al. Once hom
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268 E. Dumas-Gaudot et al. to both
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270 E. Dumas-Gaudot et al. were the
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272 E. Dumas-Gaudot et al. Dumas-Ga
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274 E. Dumas-Gaudot et al. Valot B,
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276 P.A. Olsson Fig. 16.1 Schematic
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278 P.A. Olsson Furthermore, C tran
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280 P.A. Olsson in AM fungi and a h
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282 P.A. Olsson (Graham et al. 1995
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284 P.A. Olsson Nakano A, Takahashi
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286 X.H. He et al. In many cases, N
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288 X.H. He et al. Table 17.1 Exper
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290 X.H. He et al. 17.3.1.1 Comment
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Chapter 18 Analyses of Ecophysiolog
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18 Analyses of Ecophysiological Tra
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308 I. Brito et al. fungi, little i
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310 I. Brito et al. 60% of moisture
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312 I. Brito et al. Thompson 1990;
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314 I. Brito et al. 19.8 Crop Rotat
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316 I. Brito et al. References Abbo
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318 I. Brito et al. Smith SE, Read
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320 F. Feldmann et al. inoculum of
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322 F. Feldmann et al. Table 20.1 B
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324 F. Feldmann et al. transferred
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326 F. Feldmann et al. 20.3.3 The A
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328 F. Feldmann et al. Inoculum is
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330 F. Feldmann et al. Fig. 20.5 Pr
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332 F. Feldmann et al. value for th
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334 F. Feldmann et al. of abiotic a
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336 F. Feldmann et al. Lackie SM, B
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338 M. Vestberg and A.C. Cassells b
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340 M. Vestberg and A.C. Cassells M
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342 M. Vestberg and A.C. Cassells a
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344 M. Vestberg and A.C. Cassells T
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346 M. Vestberg and A.C. Cassells d
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348 M. Vestberg and A.C. Cassells M
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350 M. Vestberg and A.C. Cassells 2
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352 M. Vestberg and A.C. Cassells 2
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354 M. Vestberg and A.C. Cassells C
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356 M. Vestberg and A.C. Cassells G
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358 M. Vestberg and A.C. Cassells P
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360 M. Vestberg and A.C. Cassells V
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362 A. Baldi et al. the capabilitie
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364 A. Baldi et al. 22.2.3 Initiati
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366 A. Baldi et al. 2. Place inocul
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368 A. Baldi et al. 22.5 Analysis 2
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370 A. Baldi et al. 22.5.4 Phenylal
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372 A. Baldi et al. Nicholas JB, Jo
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374 A. Baldi et al. Among these, fu
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Page 437 and 438: Index A A. bisporus var. burnettii,
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Page 441: Index 427 Leghemoglobin, 11 Lentinu
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