Research Report 2010 2011 - Helmholtz-Zentrum für ...
Research Report 2010 2011 - Helmholtz-Zentrum für ...
Research Report 2010 2011 - Helmholtz-Zentrum für ...
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SCIENTIFIC REPORTS | Publications<br />
153<br />
• Xu,J., Aly,A.H., Wray,V., & Proksch,P. (<strong>2010</strong>) Polyketide derivatives of<br />
endophytic fungus Pestalotiopsis sp. isolated from the Chinese mangrove<br />
plant Rhizophora mucronata. Tetrahedron Letters 52, 21-25.<br />
• Zakikhany,K., Harrington,C.R., Nimtz,M., Hinton,J.C., & Romling,U.<br />
(<strong>2010</strong>) Unphosphorylated CsgD controls biofilm formation in Salmonella<br />
enterica serovar Typhimurium. Molecular Microbiology 77,<br />
771-786.<br />
• Aly,A.H., Debbab,A., Clements,C., Edrada-Ebel,R., Orlikova,B.,<br />
Diederich,M., Wray,V., Lin,W., & Proksch,P. (<strong>2011</strong>) NF kappa B inhibitors<br />
and antitrypanosomal metabolites from endophytic fungus<br />
Penicillium sp. isolated from Limonium tubiflorum. Bioorganic and<br />
Medicinal Chemistry 19, 414-421.<br />
• Esatbeyoglu,T., Jaschok-Kentner,B., Wray,V., & Winterhalter,P. (<strong>2011</strong>)<br />
Structure elucidation of procyanidin oligomers by low-temperature<br />
1H NMR spectroscopy. Journal of Agricultural and Food Chemistry<br />
59, 62-69.<br />
• Quade,N., Dieckmann,M., Haffke,M., Heroven,A.K., Dersch,P., &<br />
Heinz,D.W.* (<strong>2011</strong>) Structure of the effector-binding domain of the<br />
LysR-type transcription factor RovM from Yersinia pseudotuberculosis.<br />
Acta Crystallographica Section D: Biological Crystallography 67,<br />
81-90.<br />
• Shiloach,J. & Rinas,U. (<strong>2011</strong>) Bacterial cultivation for producing<br />
of proteins and other biological products. In Manual of industrial<br />
microbiology and biotechnology (Demain,A.L., ed), American Society<br />
for Microbiology (ASM), Washington DC., in press<br />
• Fraatz,M.A., Riemer,S.J.L., Stober,R., Kaspera,R., Nimtz,M.,<br />
Berger,R.G., & Zorn,H. (<strong>2011</strong>) A novel oxygenase from Pleurotus<br />
sapidus transforms valencene to nootkatone. Journal of Molecular<br />
Catalysis B: Enzymatic, in press<br />
RG Recombinant Protein Expression | Dr. Joop van den Heuvel<br />
• Lu,X., Sun,J., Nimtz,M., Wissing,J., Zeng,A.-P., & Rinas,U. (<strong>2010</strong>) The<br />
intra- and extracellular proteome of Aspergillus niger growing on defined<br />
medium with xylose or maltose as carbon substrate. Microbial<br />
Cell Factories 9, 1-13.<br />
• Wilke,S., Krausze,J., Gossen,M., Gröbe,L., Jager,V., Gherardi,E., van<br />
den Heuvel, J., & Bussow,K. (<strong>2010</strong>) Glycoprotein production for<br />
structure analysis with stable, glycosylation mutant CHO cell lines<br />
established by fluorescence-activated cell sorting. Protein Science 19,<br />
1264-1271.<br />
• Bals,C., Schambach,A., Meyer,J., Scheper,T., & Rinas,U. (<strong>2011</strong>) Expression<br />
and purification of bioactive soluble murine stem cell factor<br />
from recombinant Escherichia coli using thioredoxin as fusion partner.<br />
Journal of Biotechnology 152, 1-8.<br />
• Shiloach,J. & Rinas,U. (<strong>2011</strong>) Bacterial cultivation for producing<br />
of proteins and other biological products. In: Manual of industrial<br />
microbiology and biotechnology (Demain,A.L., ed.), American<br />
Society for Microbiology (ASM), Washington DC, in press.<br />
RG Cellular Proteome <strong>Research</strong> | Dr. Lothar Jänsch<br />
• Badar,M., Hemmen,K., Nimtz,M., Stieve,M., Stiesch,M., Lenarz,T.,<br />
Hauser,H., Möllmann,U., Vogt,S., Schnabelrauch,M., & Müller,P.P.*<br />
(<strong>2010</strong>) Evaluation of madurahydroxylactone as a slow release antibacterial<br />
implant coating. Open Biomedical Engineering Journal 4,<br />
263-270.<br />
• Eisele,N., Linke,D., Bitzer,K., Na’amnieh,S., Nimtz,M., & Berger,R.G.<br />
(<strong>2010</strong>) The first characterized asparaginase from a basidiomycete,<br />
Flammulina velutipes. Bioresource Technology 102, 3316-3321.<br />
• El-Banna,A., Hajirezaei,M.R., Wissing,J., Ali,Z., Vaas,L., Heine-Dobber<br />
-nack,E., Jacobsen,H.J., Schumacher,H.M., & Kiesecker,H. (<strong>2010</strong>)<br />
Over-expression of PR-10a leads to increased salt and osmotic tolerance<br />
in potato cell cultures. Journal of Biotechnology 150, 277-287.<br />
• Klodmann,J., Sunderhaus,S., Nimtz,M., Jänsch,L., & Braun,H.P. (<strong>2010</strong>)<br />
Internal architecture of mitochondrial complex I from Arabidopsis<br />
thaliana. Plant Cell 22, 797-810.<br />
• Lu,X., Sun,J., Nimtz,M., Wissing,J., Zeng,A.-P., & Rinas,U. (<strong>2010</strong>) The<br />
intra- and extracellular proteome of Aspergillus niger growing on defined<br />
medium with xylose or maltose as carbon substrate. Microbial<br />
Cell Factories 9, 1-13.<br />
• Maahs,D.M., Siwy,J., Argiles,A., Cerna,M., Delles,C., Dominiczak,A.F.,<br />
Gayrard,N., Iphöfer,A., Jänsch,L., Jerums,G., Medek,K., Mischak,H.,<br />
Navis,G.J., Roob,J.M., Rossing,K., Rossing,P., Rychlik,I., Schiffer,E.,<br />
Schmieder,R.E., Wascher,T.C., Winklhofer-Roob,B.M., Zimmerli,L.U.,<br />
Zurbig,P., & Snell-Bergeon,J.K. (<strong>2010</strong>) Urinary collagen fragments<br />
are significantly altered in diabetes: a link to pathophysiology.<br />
PLoS ONE 5.<br />
• Mischak,H., Kolch,W., Aivaliotis,M., Bouyssie,D., Court,M., Dihazi,H.,<br />
Dihazi,G.H., Franke,J., Garin,J., de Peredo,A.G., Iphöfer,A., Jänsch,L.,<br />
Lacroix,C., Makridakis,M., Masselon,C., Metzger,J., Monsarrat,B.,<br />
Mrug,M., Norling,M., Novak,J., Pich,A., Pitt,A., Bongcam-Rudloff,E.,<br />
Siwy,J., Suzuki,H., Thongboonkerd,V., Wang,L.-S., Zoidakis,J.,<br />
Zurbig,P., Schanstra,J.P., & Vlahou,A. (<strong>2010</strong>) Comprehensive human<br />
urine standards for comparability and standardization in clinical<br />
proteome analysis. Proteomics - Clinical Applications 4, 464-478.<br />
• Pommerenke,C., Müsken,M., Becker,T., Dötsch,A., Klawonn,F., &<br />
Häußler,S. (<strong>2010</strong>) Global genotype-phenotype correlations in Pseudomonas<br />
aeruginosa. PLoS Pathogens 6, 89-90.<br />
• Steinke,N., Kaller,M., Nimtz,M., Baro,A., & Laschat,S. (<strong>2010</strong>) Columnar<br />
liquid crystals derived from crown ethers with two lateral estersubstituted<br />
ortho-terphenyl units: Unexpected destabilisation of the<br />
mesophase by potassium iodide. Liquid Crystals 37, 1139-1149.<br />
• Stepanova,T., Smal,I., van,H.J., Akinci,U., Liu,Z., Miedema,M.,<br />
Limpens,R., van,H.M., van der,R.M., Poot,R., Grosveld,F.,<br />
Mommaas,M., Meijering,E., & Galjart,N. (<strong>2010</strong>) History-dependent<br />
catastrophes regulate axonal microtubule behavior. Current biology<br />
20, 1023-1028.<br />
• Trunk,K., Benkert,B., Quack,N., Munch,R., Scheer,M., Garbe,J.,<br />
Jänsch,L., Trost,M., Wehland,J., Buer,J., Jahn,M., Schobert,M., &<br />
Jahn,D. (<strong>2010</strong>) Anaerobic adaptation in Pseudomonas aeruginosa:<br />
definition of the Anr and Dnr regulons. Environmental Microbiology<br />
12, 1719-1733.<br />
• Tschumitschew,K. & Klawonn,F. (<strong>2010</strong>) Incremental quantile estimation.<br />
Evolving Systems 1, 253-264.<br />
• Tschumitschew,K. & Klawonn,F. (<strong>2010</strong>) The need for benchmarks<br />
with data from stochastic processes and meta-models in evolving<br />
systems. In Proceedings of the International Symposium on Evolving<br />
Intelligent Systems (Angelov,P., Filev,D., & Kasabov,N., eds), pp. 30-<br />
33. SSAISB, Leicester.<br />
• Tschumitschew,K. & Klawonn,F. (<strong>2010</strong>) AVEDA: Statistical tests for<br />
finding interesting visulatisations. 5711 LNAI (Part 1) Lecture Notes<br />
in Computer Science (including subseries Lecture Notes in Artificial<br />
Intelligence and Lecture Notes in Bioinformatics), 235-242.<br />
• Krone,M. & Klawonn,F. (<strong>2011</strong>) Rank correlation coefficient correction<br />
by removing worst cases. In: Information Processing and Management<br />
of Uncertainty in Knowledge-Based Systems: Theory and Methods<br />
(Hüllermeier,E., Kruse,R., & Hoffmann,F., eds.), Springer, Berlin,<br />
pp. 356-364.<br />
• Winkler,R., Klawonn,F., & Kruse,R. (<strong>2011</strong>) Fuzzy clustering with polynomial<br />
fuzzifier function in connection with m-estimators. Applied<br />
and Computational Mathematics 10, 146-163.<br />
• Eberl,L. & Riedel,K. (<strong>2011</strong>) Mining quorum sensing regulated proteins<br />
- role of bacterial cell-to-cell communication in global gene<br />
regulation as assessed by proteomics. Proteomics, in press<br />
• Hebecker,S., Arendt,W., Heinemann,I.U., Tiefenau,J.H., Nimtz,M.,<br />
Rohde,M., Soll,D., & Moser,J. (<strong>2011</strong>) Alanyl-phosphatidylglycerol synthase:<br />
mechanism of substrate recognition during tRNA-dependent<br />
lipid modification in Pseudomonas aeruginosa. Molecular Microbiology,<br />
in press.