Research Report 2010 2011 - Helmholtz-Zentrum für ...

154 SCIENTIFIC REPORTS | Publications
• Hemmen,K., Reinl,T., Buttler,K., Behler,F., Dieken,H., Jänsch,L.,
Wilting,J., & Weich,H.A.*. (2011) High-resolution mass spectrometric
analysis of the secretome from mouse lung endothelial progenitor
cells. Angiogenesis, in press.
RG Microbial Proteomics | Prof. Dr. Katharina Riedel
• Bosshard,F., Riedel,K., Schneider,T., Geiser,C., Bucheli,M., & Egli,T.
(2010) Protein oxidation and aggregation in UVA-irradiated
Escherichia coli cells as signs of accelerated cellular senescence.
Environmental Microbiology 12, 2931-2945.
• Carranza,P., Grunau,A., Schneider,T., Hartmann,I., Lehner,A.,
Stephan,R., Gehrig,P., Grossmann,J., Groebel,K., Hoelzle,L.E.,
Eberl,L., & Riedel,K. (2010) A gel-free quantitative proteomics approach
to investigate temperature adaptation of the food-borne pathogen
Cronobacter turicensis 3032. Proteomics 10, 3248-3261.
• Grunau,A. & Riedel,K. (2011) Exoenzymes. In Encyclopaedia of Geobiology
(Reiter,J. & Thiel,V., eds), pp. 355-359. Springer.
• Hartmann,I., Carranza,P., Lehner,A., Stephan,R., Eberl,L., & Riedel,K.
(2010) Genes involved in Cronobacter sakazakii biofilm formation.
Applied and Environmental Microbiology 76, 2251-2261.
• Lumjiaktase,P., Aguilar,C., Battin,T., Riedel,K., & Eberl,L. (2010)
Construction of self-transmissible green fluorescent protein-based biosensor
plasmids and their use for identification of N-acyl homoserine-producing
bacteria in lake sediments. Applied and Environmental
Microbiology 76, 6119-6127.
• Moretti,M., Grunau,A., Minerdi,D., Gehrig,P., Roschitzki,B., Eberl,L.,
Garibaldi,A., Gullino,M.L., & Riedel,K. (2010) A proteomics approach
to study synergistic and antagonistic interactions of the fungal-bacterial
consortium Fusarium oxysporum wild-type MSA 35. Proteomics
10, 3292-3320.
• Schneider,T. & Riedel,K. (2010) Environmental proteomics: analysis
of structure and function of microbial communities. Proteomics 10,
785-798.
• Schneider,T. & Riedel,K. (2010) Environmental proteomics: Studying
structure and function of microbial communities. In Geomicrobiology:
Molecular and Environmental Perspective (Barton,L.L.,
Mandl,M., & Loy,A., eds), pp. 91-108. Springer.
• Schneider,T., Gerrits,B., Gassmann,R., Schmid,E., Gessner,M.O.,
Richter,A., Battin,T., Eberl,L., & Riedel,K. (2010) Proteome analysis of
fungal and bacterial involvement in leaf litter decomposition. Proteomics
10, 1819-1830.
• Srinivas,N., Jetter,P., Ueberbacher,B.J., Werneburg,M., Zerbe,K.,
Steinmann,J., Van der,M.B., Bernardini,F., Lederer,A., Dias,R.L.,
Misson,P.E., Henze,H., Zumbrunn,J., Gombert,F.O., Obrecht,D.,
Hunziker,P., Schauer,S., Ziegler,U., Kach,A., Eberl,L., Riedel,K.,
DeMarco,S.J., & Robinson,J.A. (2010) Peptidomimetic antibiotics target
outer-membrane biogenesis in Pseudomonas aeruginosa. Science
327, 1010-1013.
JRG Macromolecular Interactions | Prof. Dr. Christiane Ritter
• Greenwald,J., Buhtz,C., Ritter,C., Kwiatkowski,W., Choe,S.,
Maddelein,M.L., Ness,F., Cescau,S., Soragni,A., Leitz,D., Saupe,S.J.,
& Riek,R. (2010) The mechanism of prion inhibition by HET-S. Molecules
and Cells 38, 889-899.
• Wasmer,C., Zimmer,A., Sabate,R., Soragni,A., Saupe,S.J., Ritter,C., &
Meier,B.H. (2010) Structural similarity between the prion domain of
HET-s and a homologue can explain amyloid cross-seeding in spite of
limited sequence identity. Journal of Molecular Biology 402, 311-325.
JRG Centre for Structural Systems Biology at DESY |
Prof. Dr. Inari Kursula
• Chen,W.Q., Salmazo,A., Myllykoski,M., Sjoblom,B., Bidlingmaier,M.,
Pollak,A., Baumgartel,P., Djinovic-Carugo,K., Kursula,P.*., & Lubec,G.
(2010) Purification of recombinant growth hormone by clear native
gels for conformational analyses: preservation of conformation and
receptor binding. Amino Acids 39, 859-869.
• Huttu,J., Singh,B.K., Bhargav,S.P., Sattler,J.M., Schuler,H., & Kursula,I.
(2010) Crystallization and preliminary structural characterization of
the two actin-depolymerization factors of the malaria parasite. Acta
Crystallographica Section F: Structural Biology and Crystallisation
Community 66, 583-587.
• Majava,V., Polverini,E., Mazzini,A., Nanekar,R., Knoll,W., Peters,J.,
Natali,F., Baumgartel,P., Kursula,I., & Kursula,P. (2010) Structural
and functional characterization of human peripheral nervous system
myelin protein P2. PLoS ONE 5, e10300.
• Myllykoski,M. & Kursula,P.*. (2010) Expression, purification, and
initial characterization of different domains of recombinant mouse
2’,3’-cyclic nucleotide 3’-phosphodiesterase, an enigmatic enzyme
from the myelin sheath. BMC Research Notes 3, 12.
• Suresh,S., Wang,C., Nanekar,R., Kursula,P.*., & Edwardson,J.M.
(2010) Myelin basic protein and myelin protein 2 act synergistically
to cause stacking of lipid bilayers. Biochemistry 49, 3456-3463.
• Kursula,P.*. (2011) Structural biology insights into the autoantingens
of the myelin sheath. In Autoimmune Diseases: Symptoms, Diagnosis
and Treatment Nova, in press.
Dept. of Medical Microbiology | Prof. Dr. G. Singh Chhatwal
• Abt,B., Foster,B., Lapidus,A., Clum,A., Sun,H., Pukall,R., Lucas,S.,
Glavina Del,R.T., Nolan,M., Tice,H., Cheng,J.F., Pitluck,S., Liolios,K.,
Ivanova,N., Mavromatis,K., Ovchinnikova,G., Pati,A., Goodwin,L.,
Chen,A., Palaniappan,K., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D.,
Rohde,M., Göker,M., Woyke,T., Bristow,J., Eisen,J.A., Markowitz,V.,
Hugenholtz,P., Kyrpides,N.C., & Klenk,H.P. (2010) Complete genome
sequence of Cellulomonas flavigena type strain (134). Standards in
Genomic Sciences 3, 15-25.
• Anderson,I., Djao,O.D., Misra,M., Chertkov,O., Nolan,M., Lucas,S.,
Lapidus,A., Del Rio,T.G., Tice,H., Cheng,J.F., Tapia,R., Han,C., Good -
win,L., Pitluck,S., Liolios,K., Ivanova,N., Mavromatis,K., Mikhailova,N.,
Pati,A., Brambilla,E., Chen,A., Palaniappan,K., Land,M., Hauser,L.,
Chang,Y.J., Jeffries,C.D., Sikorski,J., Spring,S., Rohde,M., Eichinger,K.,
Huber,H., Wirth,R., Göker,M., Detter,J.C., Woyke,T., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., & Kyrpides,N.C.
(2010) Complete genome sequence of Methanothermus fervidus type
strain (V24S). Standards in Genomic Sciences 3, 315-324.
• Aziz,R.K., Kansal,R., Aronow,B.J., Taylor,W.L., Rowe,S.L., Kubal,M.,
Chhatwal,G.S*., Walker,M.J., & Kotb,M. (2010) Microevolution of
group A streptococci in vivo: capturing regulatory networks engaged
in sociomicrobiology, niche adaptation, and hypervirulence. PLoS
ONE 5, e9798.
• Bunk,B., Schulz,A., Stammen,S., Münch,R., Warren,M.J., Rohde,M.,
Jahn,D., & Biedendieck,R. (2010) A short story about a big magic bug.
Bioengineered Bugs 1, 85-91.
• Candela,M., Centanni,M., Fiori,J., Biagi,E., Turroni,S., Orrico,C.,
Bergmann,S., Hammerschmidt,S., & Brigidi,P. (2010) DnaK from
Bifidobacterium animalis subsp. lactis is a surface-exposed human
plasminogen receptor upregulated in response to bile salts. Microbiology
156, 1609-1618.
• Chang,Y.J., Pukall,R., Saunders,E., Lapidus,A., Copeland,A., Nolan,M.,
Glavina Del,R.T., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Han,C.,
Detter,J.C., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Liolios,K.,
Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., Land,M.,
Hauser,L., Jeffries,C.D., Brettin,T., Rohde,M., Göker,M., Bristow,J.,
Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., & Klenk,H.P.
(2010) Complete genome sequence of Acidaminococcus fermentans
type strain (VR4). Standards in Genomic Sciences 3, 1-14.