Hap Map Project - Bgbunict.it
Hap Map Project - Bgbunict.it
Hap Map Project - Bgbunict.it
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Variation in SNP dens<strong>it</strong>y w<strong>it</strong>hin the Phase II <strong>Hap</strong><strong>Map</strong><br />
Phase I<br />
Phase II<br />
Example of the fine-scale structure of SNP dens<strong>it</strong>y for a 100-kb region on chromosome<br />
17 showing polymorphic Phase I SNPs in the consensus data set (red triangles) and<br />
polymorphic Phase II SNPs in the consensus data set (blue triangles)<br />
The Phase II <strong>Hap</strong><strong>Map</strong> differs from the Phase I <strong>Hap</strong><strong>Map</strong> also in minor allele frequency<br />
(MAF) distribution. SNPs added in Phase II have lower MAF. Phase II <strong>Hap</strong><strong>Map</strong><br />
includes a better representation of rare variation than the Phase I <strong>Hap</strong><strong>Map</strong>
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