Thesis Title: Subtitle - NMR Spectroscopy Research Group
Thesis Title: Subtitle - NMR Spectroscopy Research Group
Thesis Title: Subtitle - NMR Spectroscopy Research Group
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1.2 Paramagnetic <strong>NMR</strong>. 7<br />
lead to large deviations between measurement and prediction. PCSs are less sensitive to the<br />
difference between the crystal model and the solution structure. The focus in my PhD has been on<br />
using PCS to study proteins and their interactions.<br />
Figure 1.4 The PCS is less sensitive than RDC to small discrepancies<br />
between X-ray and solution structure. A large change in the orientation<br />
of the N-H vector will considerably affect the calculation of the RDC<br />
(equation (1.2) and Figure 1.2.b). On the other hand, the PCS will be<br />
less affected as the relative position of the hydrogen with respect to the<br />
tensor frame is almost unchanged when PCS are measurable (d > 10 Å).<br />
1.2.2 The pseudocontact shift as a restraint<br />
PCSs can be calculated using equation (1.1) if the magnitude (two parameters: Δχax and<br />
Δχrh, Figure 1.5.a), location (three Cartesian coordinates x, y and z, Figure 1.5.b) and orientation<br />
(three Euler angles α, β and γ, Figure 1.5.c) of the Δχ-tensor are known, and if a structure is<br />
available. The paramagnetic chemical shift of a spin located close to the paramagnetic center is<br />
broadened beyond detection due to PRE, and consequently, its PCS cannot be observed. The cutoff<br />
radius is typically about 10 Å.<br />
The <strong>NMR</strong> resonances have first to be assigned in order to measure PCSs. Three kinds of<br />
assignment have to be distinguished (Figure 1.6):<br />
(i) The assignment of the diamagnetic <strong>NMR</strong> spectrum: it is routinely performed with<br />
conventional sequential assignment methods using one or a combination of COSY,<br />
TOCSY, NOESY <strong>NMR</strong> and triple resonance experiments.