Thesis Title: Subtitle - NMR Spectroscopy Research Group

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52 Chapter 2. Possum: paramagnetically orchestrated spectral solver of unassigned methyls. Eaton HL, Fesik SW, Glaser SJ and Drobny GP (1990) Time dependence of 13 C- 13 C magnetization transfer in isotropic mixing experiments involving amino acid spin systems. J Magn Reson 90:452-463 Farrow NA, Zhang O, Forman-Kay JD and Kay LE (1994) A heteronuclear correlation experiment for simultaneous determination of 15 N longitudinal decay and chemical exchange rates of systems in slow equilibrium. J Biomol NMR 4:727-734 Fiaux J, Bertelsen EB, Horwich AL and Wüthrich K (2002) NMR analysis of a 900K GroEL- GroES complex. Nature 418:207-211 Fischer MWF, Zeng L and Zuiderweg ERP (1996) Use of 13 C- 13 C NOE for the assignment of NMR lines of larger labeled proteins at larger magnetic fields. J Am Chem Soc 118:12457-12458 Grishaev A and Llinás M (2002) CLOUDS, a protocol for deriving a molecular proton density via NMR. Proc Natl Acad Sci U S A 99:6707-6712 Gross JD, Gelev VM and Wagner G (2003) A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes. J Biomol NMR 25:235-242 Haberz P, Rodriguez-Castañeda F, Junker J, Becker S, Leonov A and Griesinger C (2006) Two new chiral EDTA-based metal chelates for weak alignment of proteins in solution. Org Lett 8:1275-1278 Hajduk PJ, Augeri DJ, Mack J, Mendoza R, Yang J, Betz SF and Fesik SW (2000) NMR-based screening of proteins containing 13 C-labeled methyl groups. J Am Chem Soc 122:7898- 7904 Hamdan S, Bulloch EM, Thompson PR, Beck JL, Yang JY, Crowther JA, Lilley PE, Carr PD, Ollis DL, Brown SE and Dixon NE (2002a) Hydrolysis of the 5 '-p-nitrophenyl ester of TMP by the proofreading exonuclease (ε) subunit of Escherichia coli DNA polymerase III. Biochemistry 41:5266-5275 Hamdan S, Carr PD, Brown SE, Ollis DL and Dixon NE (2002b) Structural basis for proofreading during replication of the Escherichia coli chromosome. Structure 10:535-546 Ikegami T, Verdier L, Sakhaii P, Grimme S, Pescatore B, Saxena K, Fiebig KM and Griesinger C (2004) Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions. J Biomol NMR 29:339-349 Janin J, Miller S and Chothia C (1988) Surface, subunit interfaces and interior of oligomeric proteins. J Mol Biol 204:155-164 John M, Headlam MJ, Dixon NE and Otting G (2007a) Assignment of paramagnetic 15 N-HSQC spectra by heteronuclear exchange spectroscopy. J Biomol NMR 37:43-51
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Computational study of proteins wit
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iii Schmitz C, Stanton-Cook MJ, Su
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v Acknowledgements I would like to
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vii Keywords paramagnetic nmr, pseu
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ix 2.3.3 Manual resonance assignmen
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xi List of Figures Figure 1.1 NMR e
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xiii
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xv List of Abbreviations α Subunit
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Page 95 and 96: 3.5 Algorithm. 79 rhombic component
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Page 99 and 100: 3.6 Program Features. 83 A new PCS
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Page 103 and 104: 3.7 Study case. 87 The coordinates
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Page 109 and 110: 3.9 Acknowledgment. 93 variables, t
Page 111 and 112: 3.10 References. 95 Galassi M, Davi
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102 Chapter 4. Protein Structure De
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Chapter 5 Conclusion and perspectiv
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5.1 The use of PCS for structure de
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5.1 The use of PCS for structure de
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5.3 The use of PCS for protein dock
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Thesis Title: Subtitle - NMR Spectroscopy Research Group

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