Computational tools and Interoperability in Comparative ... - CBS

Origins of V. cholerae
Figure 4 BLAST matrix of
the 32 Vibrionaceae genomes.
The colours highlighting the
species are the same as in Fig. 1.
Since the reciprocal similarity
(reported as percent) is not
readable at this resolution, every
matrix cell is coloured using the
scales as indicated. The bottom
row identifies hits (other than
hits-to-self) found within a genome.
Four matrix cells reporting
high pairwise similarities are
outlined; their numbers are
specified in the text
Homology between proteomes
30.0 %
90.0 %
Homology within proteomes
6.0 %
0.0 %
A.salmonicida LFI1238
V.species Ex25
V.campbellii AND4
V.harveyi BAA1116
V.shilonii AK1
P.profundum SS9
27.2 %
1,946 / 7,165
31.2 %
2,143 / 6,862
32.5 %
2,385 / 7,336
31.1 %
2,163 / 6,948
V.cholerae N16961
V.cholerae 0395 TEDA
V.cholerae 0395 TIGR
V.cholerae V52
V.cholerae M66-2
V.cholerae MO10
V.cholerae BX330286
V.cholerae RC9
V.cholerae MJ1236
27.1 %
1,964 / 7,245
27.5 %
1,971 / 7,179
35.8 %
2,018 / 5,637
32.6 %
2,405 / 7,380
31.5 %
2,169 / 6,884
26.3 %
1,893 / 7,208
38.7 %
2,143 / 5,536
35.9 %
2,049 / 5,713
33.1 %
2,415 / 7,299
30.4 %
2,098 / 6,893
28.0 %
1,962 / 7,016
32.1 %
1,846 / 5,747
38.3 %
2,156 / 5,631
36.4 %
2,055 / 5,647
31.7 %
2,323 / 7,337
32.3 %
2,164 / 6,706
28.7 %
1,944 / 6,766
V.parahaemolyticus 2210633
V.parahaemolyticus 16
V.vulnificus CMCP6
V.vulnificus YJ016
V.species MED222
V.splendidus LGP32
A.fischeri ES114
A.fischeri MJ11
34.0 %
1,963 / 5,771
32.1 %
1,873 / 5,828
38.8 %
2,162 / 5,566
34.7 %
1,968 / 5,677
33.6 %
2,410 / 7,181
33.0 %
2,137 / 6,467
28.2 %
1,960 / 6,957
35.0 %
1,949 / 5,561
33.7 %
1,977 / 5,865
32.5 %
1,873 / 5,769
37.9 %
2,110 / 5,560
37.3 %
2,045 / 5,477
34.3 %
2,377 / 6,932
32.4 %
2,155 / 6,649
27.6 %
1,965 / 7,122
40.3 %
2,326 / 5,771
34.8 %
1,967 / 5,647
34.2 %
1,983 / 5,797
30.6 %
1,777 / 5,804
40.3 %
2,167 / 5,378
38.7 %
2,021 / 5,225
33.8 %
2,403 / 7,116
31.8 %
2,169 / 6,817
27.7 %
1,965 / 7,093
V.cholerae B33VCE
38.4 %
2,291 / 5,971
39.8 %
2,339 / 5,873
35.3 %
1,972 / 5,581
32.5 %
1,896 / 5,827
33.3 %
1,863 / 5,593
41.6 %
2,140 / 5,139
37.4 %
2,032 / 5,428
33.3 %
2,418 / 7,252
32.1 %
2,173 / 6,778
27.8 %
1,967 / 7,064
V.cholerae 2740-80
41.7 %
2,552 / 6,116
38.0 %
2,307 / 6,067
40.4 %
2,345 / 5,808
33.6 %
1,884 / 5,612
35.3 %
1,981 / 5,619
34.4 %
1,846 / 5,360
40.6 %
2,159 / 5,323
36.7 %
2,048 / 5,585
33.5 %
2,420 / 7,225
32.2 %
2,173 / 6,752
25.7 %
1,850 / 7,198
V.cholerae 1587
V.cholerae TM11079-80
V.cholerae TMA21
V.cholerae VL426
44.3 %
2,515 / 5,683
41.2 %
2,564 / 6,224
38.5 %
2,311 / 6,004
38.6 %
2,251 / 5,839
36.3 %
1,965 / 5,413
36.6 %
1,964 / 5,371
33.4 %
1,852 / 5,547
39.5 %
2,169 / 5,493
37.0 %
2,051 / 5,545
33.6 %
2,420 / 7,193
30.3 %
2,079 / 6,856
25.6 %
1,841 / 7,194
42.2 %
2,215 / 5,254
43.7 %
2,527 / 5,781
41.9 %
2,575 / 6,151
37.0 %
2,227 / 6,026
41.7 %
2,346 / 5,626
37.7 %
1,947 / 5,165
35.5 %
1,974 / 5,563
32.7 %
1,868 / 5,705
39.7 %
2,168 / 5,459
37.2 %
2,052 / 5,516
31.0 %
2,282 / 7,362
29.7 %
2,044 / 6,887
28.1 %
1,904 / 6,782
V.cholerae AM-19226
V.cholerae MZO-2
40.0 %
2,421 / 6,055
41.6 %
2,225 / 5,354
44.5 %
2,539 / 5,707
40.0 %
2,473 / 6,185
39.7 %
2,312 / 5,825
42.9 %
2,314 / 5,388
36.6 %
1,961 / 5,354
34.6 %
1,982 / 5,732
33.0 %
1,872 / 5,667
40.0 %
2,171 / 5,428
34.4 %
1,944 / 5,645
30.8 %
2,270 / 7,379
32.4 %
2,098 / 6,481
26.9 %
1,851 / 6,869
70.3 %
2,933 / 4,174
39.6 %
2,438 / 6,154
42.3 %
2,236 / 5,283
42.8 %
2,449 / 5,718
42.9 %
2,564 / 5,977
40.6 %
2,270 / 5,592
41.9 %
2,334 / 5,571
35.7 %
1,969 / 5,522
34.8 %
1,984 / 5,694
33.2 %
1,872 / 5,641
38.2 %
2,104 / 5,504
34.8 %
1,952 / 5,606
33.3 %
2,327 / 6,984
31.2 %
2,045 / 6,565
28.2 %
1,949 / 6,915
73.6 %
3,045 / 4,135
69.2 %
2,953 / 4,267
40.0 %
2,440 / 6,094
41.3 %
2,181 / 5,277
45.9 %
2,535 / 5,526
44.1 %
2,533 / 5,743
39.9 %
2,299 / 5,768
40.9 %
2,343 / 5,733
35.9 %
1,971 / 5,485
35.0 %
1,985 / 5,667
30.2 %
1,747 / 5,786
37.3 %
2,064 / 5,537
38.1 %
1,994 / 5,228
32.1 %
2,268 / 7,062
32.6 %
2,153 / 6,600
27.9 %
1,942 / 6,969
71.6 %
3,010 / 4,205
74.9 %
3,101 / 4,142
69.7 %
2,944 / 4,221
38.4 %
2,348 / 6,120
43.8 %
2,234 / 5,101
47.1 %
2,503 / 5,310
43.3 %
2,559 / 5,916
38.9 %
2,309 / 5,932
41.2 %
2,346 / 5,697
36.1 %
1,971 / 5,458
31.9 %
1,857 / 5,817
30.0 %
1,736 / 5,791
41.6 %
2,134 / 5,135
36.4 %
1,935 / 5,317
34.2 %
2,394 / 7,002
31.8 %
2,123 / 6,682
27.9 %
1,941 / 6,954
V.parahaemolyticus 2210633
V.parahaemolyticus 16
V.vulnificus CMCP6
V.vulnificus YJ016
V.species MED222
V.splendidus LGP32
A.fischeri ES114
A.fischeri MJ11
A.salmonicida LFI1238
V.species Ex25
V.campbellii AND4
V.harveyi BAA1116
V.shilonii AK1
V.cholerae 12129
V.cholerae TM11079-80
V.cholerae TMA21
V.cholerae VL426
75.9 %
3,094 / 4,077
72.6 %
3,068 / 4,226
75.5 %
3,089 / 4,092
66.3 %
2,833 / 4,271
41.4 %
2,445 / 5,905
45.9 %
2,223 / 4,842
46.4 %
2,534 / 5,464
42.3 %
2,572 / 6,075
39.3 %
2,314 / 5,892
41.4 %
2,346 / 5,670
32.8 %
1,843 / 5,611
32.1 %
1,861 / 5,795
33.6 %
1,805 / 5,377
39.1 %
2,048 / 5,244
37.7 %
2,026 / 5,367
33.4 %
2,359 / 7,060
32.0 %
2,130 / 6,656
27.9 %
1,909 / 6,851
68.7 %
2,874 / 4,181
77.2 %
3,155 / 4,088
73.5 %
3,065 / 4,172
69.8 %
2,942 / 4,217
73.2 %
2,952 / 4,034
42.4 %
2,408 / 5,683
44.3 %
2,232 / 5,038
45.2 %
2,546 / 5,633
42.7 %
2,578 / 6,032
39.4 %
2,314 / 5,868
38.0 %
2,213 / 5,823
33.1 %
1,848 / 5,585
35.6 %
1,922 / 5,398
31.9 %
1,743 / 5,469
40.4 %
2,139 / 5,293
37.3 %
2,022 / 5,418
33.4 %
2,375 / 7,115
32.0 %
2,097 / 6,549
29.6 %
2,295 / 7,753
70.4 %
2,922 / 4,153
67.2 %
2,880 / 4,288
78.0 %
3,149 / 4,038
68.5 %
2,914 / 4,256
76.0 %
3,059 / 4,025
73.5 %
2,863 / 3,897
41.8 %
2,434 / 5,818
43.0 %
2,240 / 5,212
45.5 %
2,548 / 5,599
42.9 %
2,579 / 6,005
36.9 %
2,208 / 5,989
38.0 %
2,209 / 5,811
36.7 %
1,906 / 5,192
34.2 %
1,872 / 5,473
33.5 %
1,845 / 5,501
39.4 %
2,118 / 5,370
37.3 %
2,019 / 5,407
33.0 %
2,325 / 7,056
35.2 %
2,581 / 7,333
27.9 %
1,972 / 7,061
64.7 %
2,888 / 4,463
70.3 %
2,965 / 4,217
69.7 %
2,916 / 4,183
71.5 %
2,986 / 4,175
74.1 %
3,024 / 4,083
75.2 %
2,954 / 3,928
76.4 %
2,970 / 3,887
40.8 %
2,445 / 5,993
43.4 %
2,242 / 5,171
45.8 %
2,552 / 5,568
39.4 %
2,432 / 6,172
36.4 %
2,186 / 6,003
41.8 %
2,264 / 5,418
34.9 %
1,843 / 5,282
35.7 %
1,970 / 5,513
32.9 %
1,824 / 5,545
40.3 %
2,145 / 5,320
37.8 %
2,001 / 5,288
46.4 %
3,371 / 7,266
34.3 %
2,276 / 6,634
29.4 %
2,212 / 7,534
76.9 %
3,165 / 4,117
64.9 %
2,940 / 4,533
72.2 %
2,986 / 4,136
69.0 %
2,860 / 4,145
79.5 %
3,125 / 3,932
73.0 %
2,908 / 3,986
80.4 %
3,080 / 3,831
73.1 %
2,977 / 4,072
41.1 %
2,450 / 5,957
43.6 %
2,244 / 5,143
42.2 %
2,409 / 5,711
39.1 %
2,413 / 6,176
39.9 %
2,238 / 5,609
39.9 %
2,202 / 5,514
36.8 %
1,951 / 5,307
34.9 %
1,952 / 5,586
33.0 %
1,831 / 5,549
39.8 %
2,086 / 5,245
47.0 %
2,741 / 5,827
34.9 %
2,496 / 7,160
34.4 %
2,472 / 7,184
27.8 %
2,222 / 7,979
83.4 %
3,315 / 3,973
76.7 %
3,195 / 4,167
67.6 %
2,983 / 4,413
68.5 %
2,869 / 4,191
71.8 %
2,896 / 4,036
77.9 %
3,002 / 3,856
78.5 %
3,061 / 3,901
77.3 %
3,098 / 4,009
73.4 %
2,971 / 4,050
41.3 %
2,449 / 5,936
41.1 %
2,153 / 5,242
41.4 %
2,372 / 5,735
43.0 %
2,483 / 5,781
38.0 %
2,171 / 5,707
42.0 %
2,320 / 5,530
36.1 %
1,940 / 5,373
35.2 %
1,954 / 5,558
33.1 %
1,804 / 5,448
64.9 %
3,384 / 5,214
37.8 %
2,081 / 5,503
38.7 %
2,880 / 7,439
33.0 %
2,516 / 7,615
28.1 %
2,155 / 7,667
82.4 %
3,302 / 4,009
81.3 %
3,320 / 4,085
81.6 %
3,264 / 4,000
65.1 %
2,880 / 4,423
73.7 %
2,947 / 4,001
71.5 %
2,801 / 3,915
83.0 %
3,135 / 3,777
75.8 %
3,073 / 4,056
77.1 %
3,088 / 4,007
73.8 %
2,975 / 4,030
37.9 %
2,313 / 6,099
41.2 %
2,152 / 5,228
46.3 %
2,464 / 5,326
40.1 %
2,373 / 5,919
40.1 %
2,293 / 5,719
41.1 %
2,303 / 5,603
36.2 %
1,940 / 5,352
35.3 %
1,926 / 5,455
31.9 %
2,074 / 6,494
45.0 %
2,357 / 5,232
39.9 %
2,372 / 5,942
37.0 %
2,900 / 7,832
36.5 %
2,593 / 7,105
29.5 %
2,198 / 7,456
83.2 %
3,325 / 3,995
80.8 %
3,319 / 4,106
81.9 %
3,311 / 4,041
77.5 %
3,153 / 4,066
67.3 %
2,909 / 4,320
81.0 %
2,989 / 3,688
72.2 %
2,861 / 3,960
79.4 %
3,144 / 3,961
75.1 %
3,061 / 4,077
78.0 %
3,097 / 3,971
65.6 %
2,791 / 4,256
38.2 %
2,320 / 6,080
46.0 %
2,220 / 4,821
43.5 %
2,367 / 5,437
43.5 %
2,550 / 5,859
39.2 %
2,272 / 5,796
41.6 %
2,314 / 5,569
36.3 %
1,906 / 5,250
35.5 %
2,270 / 6,400
32.3 %
1,842 / 5,705
46.1 %
2,626 / 5,697
37.5 %
2,396 / 6,387
34.6 %
2,682 / 7,762
36.7 %
2,562 / 6,982
30.3 %
2,110 / 6,968
85.8 %
3,291 / 3,837
80.7 %
3,321 / 4,117
81.6 %
3,311 / 4,057
76.3 %
3,142 / 4,120
78.4 %
3,157 / 4,029
67.8 %
2,836 / 4,184
74.9 %
2,944 / 3,932
69.0 %
2,868 / 4,158
79.3 %
3,138 / 3,958
76.3 %
3,076 / 4,029
71.3 %
2,953 / 4,142
65.2 %
2,768 / 4,246
42.3 %
2,399 / 5,675
42.7 %
2,113 / 4,953
45.9 %
2,501 / 5,451
42.2 %
2,506 / 5,941
39.8 %
2,292 / 5,756
41.5 %
2,272 / 5,479
35.9 %
2,233 / 6,219
34.5 %
1,965 / 5,696
32.6 %
2,040 / 6,250
43.2 %
2,655 / 6,143
36.9 %
2,259 / 6,124
36.7 %
2,759 / 7,516
30.4 %
2,085 / 6,866
29.7 %
2,127 / 7,169
V.cholerae N16961
V.cholerae 0395 TEDA
V.cholerae 0395 TIGR
V.cholerae V52
V.cholerae M66-2
V.cholerae MO10
V.cholerae BX330286
V.cholerae RC9
V.cholerae MJ1236
V.cholerae B33VCE
V.cholerae 2740-80
V.cholerae AM-19226
V.cholerae MZO-2
V.cholerae 12129
V.cholerae 1587
79.6 %
3,139 / 3,944
82.5 %
3,278 / 3,971
81.4 %
3,309 / 4,067
75.3 %
3,136 / 4,162
83.7 %
3,275 / 3,915
74.3 %
2,987 / 4,018
68.1 %
2,876 / 4,226
73.3 %
2,983 / 4,071
69.1 %
2,864 / 4,145
80.3 %
3,147 / 3,918
69.2 %
2,925 / 4,226
70.2 %
2,930 / 4,172
71.6 %
2,802 / 3,915
39.7 %
2,303 / 5,796
44.3 %
2,213 / 5,001
46.1 %
2,513 / 5,455
42.9 %
2,536 / 5,906
39.2 %
2,230 / 5,684
43.9 %
2,762 / 6,293
36.2 %
1,976 / 5,464
35.3 %
2,191 / 6,211
30.5 %
2,050 / 6,715
40.2 %
2,413 / 5,999
38.6 %
2,289 / 5,931
29.6 %
2,214 / 7,478
29.4 %
2,083 / 7,082
28.3 %
1,980 / 6,989
92.9 %
3,489 / 3,754
78.1 %
3,147 / 4,032
83.4 %
3,267 / 3,919
76.0 %
3,147 / 4,141
82.6 %
3,267 / 3,954
86.6 %
3,253 / 3,757
78.6 %
3,113 / 3,962
66.4 %
2,917 / 4,393
73.6 %
2,979 / 4,045
70.0 %
2,873 / 4,102
73.1 %
3,000 / 4,103
64.3 %
2,805 / 4,365
77.2 %
2,983 / 3,866
68.6 %
2,743 / 4,001
42.9 %
2,463 / 5,745
43.5 %
2,200 / 5,058
45.7 %
2,506 / 5,480
42.3 %
2,475 / 5,845
41.4 %
2,698 / 6,523
45.4 %
2,507 / 5,523
36.3 %
2,179 / 6,005
33.1 %
2,209 / 6,672
33.1 %
2,074 / 6,269
42.3 %
2,451 / 5,795
33.6 %
1,915 / 5,695
29.3 %
2,244 / 7,665
26.7 %
1,916 / 7,168
28.0 %
2,022 / 7,222
77.1 %
3,186 / 4,134
89.7 %
3,485 / 3,884
80.2 %
3,169 / 3,953
79.4 %
3,143 / 3,956
82.9 %
3,277 / 3,954
85.6 %
3,244 / 3,790
91.2 %
3,355 / 3,679
75.5 %
3,125 / 4,141
66.3 %
2,908 / 4,386
74.3 %
2,982 / 4,014
68.3 %
2,820 / 4,126
69.5 %
2,908 / 4,185
71.6 %
2,868 / 4,006
71.8 %
2,855 / 3,974
77.1 %
2,975 / 3,861
40.8 %
2,400 / 5,876
44.9 %
2,242 / 4,998
45.1 %
2,444 / 5,415
46.4 %
3,042 / 6,550
43.7 %
2,492 / 5,705
43.7 %
2,670 / 6,112
34.2 %
2,205 / 6,448
35.7 %
2,219 / 6,213
34.9 %
2,114 / 6,065
34.5 %
1,963 / 5,692
32.5 %
1,919 / 5,903
28.3 %
2,095 / 7,406
34.5 %
2,335 / 6,762
25.5 %
1,872 / 7,339
80.4 %
3,303 / 4,109
74.9 %
3,187 / 4,253
81.1 %
3,280 / 4,046
75.1 %
3,024 / 4,028
87.0 %
3,272 / 3,762
83.2 %
3,208 / 3,855
90.1 %
3,346 / 3,715
91.7 %
3,455 / 3,766
74.6 %
3,103 / 4,160
67.0 %
2,915 / 4,348
68.5 %
2,844 / 4,150
68.0 %
2,806 / 4,126
76.7 %
2,961 / 3,861
67.9 %
2,780 / 4,092
82.5 %
3,117 / 3,780
73.0 %
2,911 / 3,989
42.4 %
2,451 / 5,781
43.5 %
2,155 / 4,958
48.9 %
2,994 / 6,128
43.2 %
2,597 / 6,013
41.9 %
2,637 / 6,301
40.8 %
2,680 / 6,565
36.6 %
2,201 / 6,016
38.1 %
2,277 / 5,979
55.5 %
2,683 / 4,838
33.9 %
1,991 / 5,874
30.3 %
1,795 / 5,923
43.4 %
2,981 / 6,875
30.9 %
2,144 / 6,948
26.1 %
2,254 / 8,624
88.1 %
3,495 / 3,966
88.8 %
3,489 / 3,927
80.2 %
3,271 / 4,079
77.3 %
3,164 / 4,093
80.7 %
3,108 / 3,853
83.0 %
3,126 / 3,768
91.4 %
3,373 / 3,689
90.4 %
3,439 / 3,805
96.0 %
3,531 / 3,678
75.4 %
3,111 / 4,124
64.7 %
2,847 / 4,403
70.6 %
2,886 / 4,087
73.1 %
2,818 / 3,854
71.8 %
2,849 / 3,968
78.6 %
3,059 / 3,894
78.0 %
3,045 / 3,906
74.7 %
2,922 / 3,914
40.9 %
2,360 / 5,769
43.5 %
2,547 / 5,858
47.2 %
2,608 / 5,524
67.5 %
3,741 / 5,540
39.7 %
2,672 / 6,728
72.3 %
3,688 / 5,101
38.7 %
2,246 / 5,808
75.0 %
3,261 / 4,346
52.4 %
2,666 / 5,085
30.5 %
1,813 / 5,939
46.2 %
2,452 / 5,307
45.0 %
3,018 / 6,702
30.1 %
2,581 / 8,574
25.9 %
2,170 / 8,370
P.profundum SS9
3.0 %
110 / 3,665
4.2 %
155 / 3,729
4.3 %
157 / 3,665
3.3 %
120 / 3,599
2.8 %
99 / 3,560
1.8 %
59 / 3,353
2.9 %
100 / 3,429
2.8 %
102 / 3,619
3.0 %
109 / 3,575
2.6 %
92 / 3,593
3.5 %
125 / 3,567
2.8 %
99 / 3,586
2.5 %
84 / 3,305
2.2 %
73 / 3,311
2.1 %
72 / 3,454
2.4 %
83 / 3,442
2.9 %
99 / 3,427
1.9 %
62 / 3,316
3.2 %
147 / 4,662
2.1 %
79 / 3,683
2.8 %
121 / 4,337
3.1 %
150 / 4,773
2.3 %
103 / 4,463
2.8 %
118 / 4,277
2.6 %
96 / 3,691
2.9 %
112 / 3,894
3.3 %
111 / 3,378
2.7 %
103 / 3,886
2.3 %
88 / 3,822
3.9 %
201 / 5,117
3.9 %
200 / 5,078
5.0 %
243 / 4,897