Computational tools and Interoperability in Comparative ... - CBS
Computational tools and Interoperability in Comparative ... - CBS
Computational tools and Interoperability in Comparative ... - CBS
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Genome Comparisons<br />
12<br />
TRNA_SCAN_COUNT<br />
LENGTH<br />
NGENES<br />
RNAMMER_SSU_COUNT<br />
ATCONTENT<br />
LOC_DIR_REPEAT<br />
LOC_INV_REPEAT<br />
SR_PERCENT<br />
CODING_FRACTION<br />
BPPRGENE<br />
Escherichia coli SMS−3−5<br />
Escherichia coli O127:H6 str. E2348/69<br />
Escherichia coli E24377A<br />
Escherichia coli S88<br />
Escherichia coli SE11<br />
Escherichia coli UMN026<br />
Escherichia coli IAI39<br />
Escherichia coli 55989<br />
Escherichia coli ED1a<br />
Escherichia coli UTI89<br />
Escherichia coli CFT073<br />
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476<br />
Salmonella enterica subsp. enterica serovar Newport str. SL254<br />
Salmonella enterica subsp. enterica serovar Agona str. SL483<br />
Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633<br />
Salmonella enterica subsp. enterica serovar Paratyphi C stra<strong>in</strong> RKS4594<br />
Salmonella enterica subsp. enterica serovar Dubl<strong>in</strong> str. CT_02021853<br />
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC−B67<br />
Escherichia coli 536<br />
Salmonella enterica subsp. enterica serovar Typhi str. CT18<br />
Serratia proteamaculans 568<br />
Klebsiella pneumoniae subsp. pneumoniae MGH 78578<br />
Klebsiella pneumoniae NTUH−K2044<br />
Klebsiella pneumoniae 342<br />
Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7<br />
Citrobacter koseri ATCC BAA−895<br />
Escherichia coli O157:H7 str. Sakai<br />
Escherichia coli O157:H7 EDL933<br />
Escherichia coli O157:H7 str. EC4115<br />
Escherichia coli str. K−12 substr. MG1655<br />
Escherichia coli str. K−12 substr. W3110<br />
Escherichia coli HS<br />
Escherichia coli IAI1<br />
Escherichia fergusonii ATCC 35469<br />
Salmonella enterica subsp. arizonae serovar 62:z4,z23:−−<br />
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109<br />
Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601<br />
Enterobacter sp. 638<br />
Escherichia coli BL21<br />
Escherichia coli ATCC 8739<br />
Escherichia coli str. K−12 substr. DH10B<br />
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2<br />
Escherichia coli BW2952<br />
Escherichia coli BL21(DE3)<br />
Yers<strong>in</strong>ia pseudotuberculosis YPIII<br />
Yers<strong>in</strong>ia pseudotuberculosis PB1/+<br />
Yers<strong>in</strong>ia pseudotuberculosis IP 31758<br />
Yers<strong>in</strong>ia enterocolitica subsp. enterocolitica 8081<br />
Yers<strong>in</strong>ia pseudotuberculosis IP 32953<br />
Shigella boydii Sb227<br />
Shigella dysenteriae Sd197<br />
Escherichia coli APEC O1<br />
Shigella flexneri 2a str. 301<br />
Shigella sonnei Ss046<br />
Shigella flexneri 5 str. 8401<br />
Shigella flexneri 2a str. 2457T<br />
Shigella boydii CDC 3083−94<br />
Edwardsiella ictaluri 93−146<br />
Cronobacter sakazakii ATCC BAA−894<br />
Erw<strong>in</strong>ia tasmaniensis Et1/99<br />
Photorhabdus lum<strong>in</strong>escens subsp. laumondii TTO1<br />
Photorhabdus asymbiotica<br />
Proteus mirabilis HI4320<br />
Pectobacterium atrosepticum SCRI1043<br />
Salmonella enterica subsp. enterica serovar Gall<strong>in</strong>arum str. 287/91<br />
Pectobacterium carotovorum subsp. carotovorum PC1<br />
Dickeya zeae Ech1591<br />
Dickeya dadantii Ech703<br />
Salmonella enterica subsp. enterica serovar Typhi str. Ty2<br />
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150<br />
Yers<strong>in</strong>ia pestis Angola<br />
Yers<strong>in</strong>ia pestis CO92<br />
Yers<strong>in</strong>ia pestis Antiqua<br />
Yers<strong>in</strong>ia pestis KIM<br />
Yers<strong>in</strong>ia pestis Nepal516<br />
Yers<strong>in</strong>ia pestis biovar Microtus str. 91001<br />
Yers<strong>in</strong>ia pestis Pestoides F<br />
Sodalis gloss<strong>in</strong>idius str. morsitans<br />
Buchnera aphidicola str. Cc (C<strong>in</strong>ara cedri)<br />
Wigglesworthia gloss<strong>in</strong>idia endosymbiont of Gloss<strong>in</strong>a brevipalpis<br />
C<strong>and</strong>idatus Blochmannia floridanus<br />
C<strong>and</strong>idatus Blochmannia pennsylvanicus str. BPEN<br />
Buchnera aphidicola str. Sg (Schizaphis gram<strong>in</strong>um)<br />
Buchnera aphidicola str. Bp (Baizongia pistaciae)<br />
Buchnera aphidicola str. APS (Acyrthosiphon pisum)<br />
Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)<br />
Buchnera aphidicola str. 5A (Acyrthosiphon pisum)<br />
−1 −0.5 0 0.5 1<br />
Value<br />
Figure 2.5: 2D-cluster<strong>in</strong>g show<strong>in</strong>g 87 Enterobacteriaceae.<br />
Color Key