29.07.2013 Views

Computational tools and Interoperability in Comparative ... - CBS

Computational tools and Interoperability in Comparative ... - CBS

Computational tools and Interoperability in Comparative ... - CBS

SHOW MORE
SHOW LESS

Create successful ePaper yourself

Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.

Bits<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

Bits<br />

T A T A A T<br />

1<br />

2<br />

(a)<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

3<br />

4<br />

Position<br />

1<br />

5<br />

6<br />

Bits<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

T C A A A A A A T T A T T T A A A A T T T C<br />

1<br />

2<br />

3<br />

4<br />

5<br />

6<br />

7<br />

8<br />

9<br />

10<br />

(b)<br />

T T T G C T T G A A A A A T G A G C G G T<br />

2<br />

3<br />

4<br />

5<br />

6<br />

7<br />

8<br />

9<br />

10<br />

(d)<br />

11<br />

12<br />

Position<br />

Bits<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

13<br />

14<br />

15<br />

16<br />

17<br />

18<br />

19<br />

20<br />

11<br />

12<br />

Position<br />

21<br />

13<br />

14<br />

Bits<br />

15<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

16<br />

rRNA operons <strong>and</strong> promoter analysis<br />

17<br />

1<br />

18<br />

19<br />

20<br />

21<br />

22<br />

T A T T A T<br />

2<br />

(e)<br />

T C A G A A A A A G A A A G C A A A A A A A<br />

1<br />

2<br />

3<br />

4<br />

5<br />

6<br />

7<br />

8<br />

9<br />

10<br />

11<br />

(g)<br />

12<br />

13<br />

14<br />

15<br />

16<br />

17<br />

3<br />

4<br />

Position<br />

5<br />

6<br />

Bits<br />

Bits<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

2.0<br />

1.5<br />

1.0<br />

0.5<br />

0.0<br />

T T G T C A<br />

1<br />

1<br />

2<br />

(c)<br />

3<br />

4<br />

Position<br />

5<br />

T T G A C T<br />

Figure 3.7: Logos show<strong>in</strong>g the base compostion of P1 <strong>and</strong> P2 of E. coli genomes, as identified<br />

by <strong>in</strong>itial P1 <strong>and</strong> P2 scan: P1 –10 hexamer (a), P1 –35 hexamer (b), P1 UP element (c), P1 FIS<br />

b<strong>in</strong>d<strong>in</strong>g motif (d), P2 –10 hexamer (e), P2 –35 hexamer (f), P2 UP element (g)<br />

Position<br />

18<br />

19<br />

20<br />

21<br />

22<br />

2<br />

(f)<br />

3<br />

4<br />

Position<br />

5<br />

6<br />

6<br />

113

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!