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In silico cloning - Bits.vib.be

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fine the minimum num<strong>be</strong>r of positions and the num<strong>be</strong>r of consecutive positions in the 3’ end<br />

of the primer that must base pair to the sequence in order to speak of a match.<br />

Note that the num<strong>be</strong>r of mismatches is reported in the output, so you can filter on this afterwards.<br />

Below the Match criteria, you can adjust Concentrations concerning the reaction mixture. This is<br />

used when reporting melting temperatures for the primers.<br />

Click Next | Adjust the output options<br />

Click Finish<br />

You now see the fragment table displaying the PCR product. <strong>In</strong> the Side Panel you can choose to<br />

show information about melting temperature for the primers.<br />

Right-click the fragment and select Open Fragment.

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