Maternal variation in Huichol and Mixtec populations from Mexico

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Figure 8. Haplogroup D1 haplotype network. The green node in the middle, which indicates the Mixtecs, is chosen to be the central node. It exhibits the following mutations relative to rCRS (Andrews et al., 1999): 16223, 16325, 16362, 00073 and 00263. Mutational positions from this haplotype are noted in small print. The color scheme is the same as for the haplogroup A network. 28
2.3.2 C4c haplogroup One Huichol individual was determined to belong to extremely rare C4c haplogroup. C4c has been reported so far only in North America and two samples in Ijka population from Colombia. To determine the phylogenetic relationship with previously published data the mitochondrial genome of the Huichol sample was completely sequenced. Phylogenetic tree construction was performed following a maximum parsimony approach. It was built using newly determined full mtDNA genome and 16 previously published sequences. They included: 1 by Tamm et al. (2007), 1 by Malhi et al. (2010) and 14 by Hooshiar Kashani et al. (2011) (Figure 9). Figure 9. The map of populations where is found C4c haplogroup. With the green colour are shown the Canadian Native American populations. Red spots represent 12 populations from the USA. The present study Huichol population`s location is marked with violet. With the grey colour are marked populations determined by the HVS region analysis to carry C4c haplogroup: the Kickapoo population from Cansas city, Oklahoma, USA; the Cherokee from North Carolina, USA; the Chippewa from the Great Lakes, Canada; and the Oneota site, Illinois, USA. Origin: modified from Hooshiar Kashani et al., 2011 The phylogenetic tree of C4c haplogroup is seen on Figure4. The haplogroup C4c is characterized by the following mutations: 2232 insertion, 14433 and 15148. All haplotypes (except one Canadian, one American and one Columbian) are clustered into C4c1 subclade by 29
Page 1 and 2: TARTU UNIVERSITY FACULTY OF SCIENCE
Page 3 and 4: ABBREVIATIONS bp - base pair D-loop
Page 5 and 6: 1. LITERATURE OVERVIEW 1.1 Mitochon
Page 7 and 8: One of the reasons may be, that ped
Page 9 and 10: Figure 2. Diagnostic markers of Nat
Page 11 and 12: According to it, only one small gro
Page 13 and 14: their way down to the South America
Page 15 and 16: 2. EXPERIMENTAL STUDY 2.1 Aims of t
Page 17 and 18: To determine possible contamination
Page 19 and 20: * let dry at 37ºC for 5 min *add 1
Page 21 and 22: 2.3 RESULTS AND DISCUSSION 2.3.1 Ph
Page 23 and 24: that populations have gone through
Page 25 and 26: Figure 5. Haplogroup A haplotype ne
Page 27: Figure 7. Haplogroup C haplotype ne
Page 31 and 32: N 12705s 16223 R 73 11719s R0 14766
Page 33 and 34: CONCLUSIONS Mitochondrial DNA has b
Page 35 and 36: mitokondriaalne DNA. Huitšoli proo
Page 37 and 38: References Achilli, A, Perego, U. A
Page 39 and 40: Forster, P., Torroni, A., Renfrew,
Page 41 and 42: Loogvali, E. L., Kivisild, T., Marg
Page 43 and 44: Sandoval, K., Buentello-Malo, L., P
Page 45 and 46: SUPPLEMENTARY MATERIALS Tabel 1.1.
Page 47 and 48: Table 4.Data used for haplogroups f

Maternal variation in Huichol and Mixtec populations from Mexico

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