Maternal variation in Huichol and Mixtec populations from Mexico

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Tabel 3. Primers for PCR and sequence reaction for full sequence (Rieder et al.,1998) 1F 5´ CTCCTCAAAGCAATACACTG 3´ 1R 5´ TGCTAAATCCACCTTCGACC 3´ 2F 5´ CGATCAACCTCACCACCTCT 3´ 2R 5´ TGGACAACCAGCTATCACCA 3´ 3F 5´GGACTAACCCCTATACCTTCTGC 3´ 3R 5´ GGCAGGTCAATTTCACTGGT 3´ 4F 5´ AAATCTTACCCCGCCTGTTT 3´ 4R 5´ AGGAATGCCATTGCGATTAG 3´ 5F 5´ TACTTCACAAAGCGCCTTCC 3´ 5R 5´ ATGAAGAATAGGGCGAAGGG 3´ 6F 5´ TGGCTCCTTTAACCTCTCCA 3´ 6R 5´ AAGGATTATGGATGCGGTTG 3´ 7F 5´ ACTAATTAATCCCCTGGCCC 3´ 7R 5´ AATGGGGTGGGTTTTGTATG 3´ 8F 5´ CTAACCGGCTTTTTGCCC 3´ 8R 5´ ACCTAGAAGGTTGCCTGGCT 3´ 9F 5´ GAGGCCTAACCCCTGTCTTT 3´ 9R 5´ ATTCCGAAGCCTGGTAGGAT 3´ 10F 5´ CTCTTCGTCTGATCCGTCCT 3´ 10R 5´ AGCGAAGGCTTCTCAAATCA 3´ 11F 5´ ACGCCAAAATCCATTTCACT 3´ 11R 5´ CGGGAATTGCATCTGTTTTT 3´ 12F 5´ ACGAGTACACCGACTACGGC 3´ 12R 5´ TGGGTGGTTGGTGTAAATGA 3´ 13F 5´ TTTCCCCCTCTATTGATCCC 3´ 13R 5´ GTGGCCTTGGTATGTGCTTT 3´ 14F 5´ CCCACCAATCACATGCCTAT 3´ 14R 5´ TGTAGCCGTTGAGTTGTGGT 3´ 15F 5´ TCTCCATCTATTGATGAGGGTCT 3´ 15R 5´ AATTAGGCTGTGGGTGGTTG 3´ 16F 5´ GCCATACTAGTCTTTGCCGC 3´ 16R 5´ TTGAGAATGAGTGTGAGGCG 3´ 17F 5´ TCACTCTCACTGCCCAAGAA 3´ 17R 5´ GGAGAATGGGGGATAGGTGT 3´ 18F 5´ TATCACTCTCCTACTTACAG 3´ 18R 5´ AGAAGGATATAATTCCTACG 3´ 19F 5´ AAACAACCCAGCTCTCCCTAA 3´ 19R 5´ TCGATGATGTGGTCTTTGGA 3´ 20F 5´ ACATCTGTACCCACGCCTTC 3´ 20R 5´ AGAGGGGTCAGGGTTGATTC 3´ 21F 5´ GCATAATTAAACTTTACTTC 3´ 21R 5´ AGAATATTGAGGCGCCATTG 3´ 22F 5´ TGAAACTTCGGCTCACTCCT 3´ 22R 5´ AGCTTTGGGTGCTAATGGTG 3´ 23F 5´ TCATTGGACAAGTAGCATCC 3´ 23R 5´ GAGTGGTTAATAGGGTGATAG 3´ 24F 5´ CACCATCCTCCGTGAAATCA 3´ 24R 5´ AGGCTAAGCGTTTTGAGCTG 3´ 46
Table 4.Data used for haplogroups frequency table Populatsions Haplogroups Language Family Location Country References n A B C D X D4h3 Kuna 113 82 31 0 0 0 0 Chibchan Central America Panama Tamm 2007, Batista 1995, Torroni 1993a Central Embera 83 19 44 20 0 0 0 Choco America Panama/Colombia Tamm 2007, Kolman 1997 Waunana 88 27 27 30 4 0 0 Choco Central America Panama/Colombia Tamm 2007, Kolman 1997 Guatuso (Male´ku Jai´ka) 20 17 3 0 0 0 0 Chibchan Mesoamerica Costa Rica Torroni 94 Boruca 14 3 10 0 1 0 0 Chibchan Mesoamerica Costa Rica Torroni 93a Bribri/Cabecar 24 13 11 0 0 0 0 Chibchan Mesoamerica Costa Rica Torroni 93a Huetar 27 19 1 0 7 0 0 Chibchan Mesoamerica Costa Rica Santos 94 Guaymi 16 11 5 0 0 0 0 Chibchan Mesoamerica Panama/Costa Rica Torroni 93a Ngöbe 123 80 43 0 0 0 0 Chibchan Mesoamerica Panama/Costa Rica Tamm 2007, Kolman 1997 Teribe 20 16 4 0 0 0 0 Chibchan Mesoamerica Panama/Costa Rica Torroni 94 Purépecha 34 20 3 8 3 0 0 isolate Mesoamerica Mexico Sandoval et al., 2009 Maya(contemporary) 78 46 15 12 5 0 0 Mayan Mesoamerica Mexico? Schurr 1990, Torroni 1993, Sandoval et al., 2009 Maya-Xcaret 24 21 1 2 0 0 0 Mayan Mesoamerica Mecico Gonzàlez-Oliver 2001 Mixe 68 26 20 16 6 0 0 Mixe-Zoguean Mesoamerica Mexico Kemp 2010, Torroni 1994 Mixtec 115 84 19 8 4 0 0 Otomanguean Mesoamerica Mexico Kemp 2010, Torroni 1994, Sandoval et al., 2009 Mixtec 29 18 5 4 2 0 0 Otomanguean Mesoamerica Mexico present study Otomí 68 27 17 20 4 0 0 Otomanguean Mesoamerica Mexico Sandoval et al., 2009 Triqui 107 77 30 0 0 0 0 Otomanguean Mesoamerica Mexico Sandoval et al., 2009 Zapotec 103 41 24 30 5 0 0 Otomanguean Mesoamerica Mexico Kemp 2010, Torroni 1994 Aztecs 37 23 6 2 6 0 0 Uto-Aztecan Mesoamerica Mexico De la Cruz 2008, Kemp 2005 1
Page 1 and 2: TARTU UNIVERSITY FACULTY OF SCIENCE
Page 3 and 4: ABBREVIATIONS bp - base pair D-loop
Page 5 and 6: 1. LITERATURE OVERVIEW 1.1 Mitochon
Page 7 and 8: One of the reasons may be, that ped
Page 9 and 10: Figure 2. Diagnostic markers of Nat
Page 11 and 12: According to it, only one small gro
Page 13 and 14: their way down to the South America
Page 15 and 16: 2. EXPERIMENTAL STUDY 2.1 Aims of t
Page 17 and 18: To determine possible contamination
Page 19 and 20: * let dry at 37ºC for 5 min *add 1
Page 21 and 22: 2.3 RESULTS AND DISCUSSION 2.3.1 Ph
Page 23 and 24: that populations have gone through
Page 25 and 26: Figure 5. Haplogroup A haplotype ne
Page 27 and 28: Figure 7. Haplogroup C haplotype ne
Page 29 and 30: 2.3.2 C4c haplogroup One Huichol in
Page 31 and 32: N 12705s 16223 R 73 11719s R0 14766
Page 33 and 34: CONCLUSIONS Mitochondrial DNA has b
Page 35 and 36: mitokondriaalne DNA. Huitšoli proo
Page 37 and 38: References Achilli, A, Perego, U. A
Page 39 and 40: Forster, P., Torroni, A., Renfrew,
Page 41 and 42: Loogvali, E. L., Kivisild, T., Marg
Page 43 and 44: Sandoval, K., Buentello-Malo, L., P
Page 45: SUPPLEMENTARY MATERIALS Tabel 1.1.

Maternal variation in Huichol and Mixtec populations from Mexico

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