Maternal variation in Huichol and Mixtec populations from Mexico

More documents

Recommendations

Info

Mulligan, C.J., Kitchen, A. and Miyamoto, M. M. (2008). Updated three stage model for the peopling of the Americas. PLoS ONE 3: e3199. Nichols, J. 1992. Linguistic Diversity in Space and Time. Chicago: University of Parsons, T. J., Muniec, D. S., Sullivan, K., Woodyatt, N., Alliston-Greiner, R., Wilson, M. R., Berry, D. L., Holland, K. A., Weedn, V. W., Gill, P., Holland, M. M. (1997). A high observed substitution rate in the human mitochondrial DNA control region. Nat. Genet. 15: 363-368. Pearson, G. and Ream, J. (2005). Clovis on the Caribbean Coast of Venezuela. Current Research in the Pleistocene 22: 28–31. Perego, U. A., Achilli, A., Angerhofer, N., Accetturo, M., Pala, M., Olivieri, A., Hooshiar Kashani, B., Ritchie, K. H., Scozzari R., Kong Q. P., Myres N. M., Salas, A., Semino, O., Bandelt, H. J., Woodward, S. R. and Torroni, A. (2009). Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. Curr Biol 19(1):1-8. Perego, U. A., Angerhofer, N., Pala, M., Olivieri, A., Lancioni, H., Hooshiar Kashani, B., Carossa, V., Ekins, J. E., Gómez-Carballa, A., Huber, G., Zimmermann, B., Corach, D., Babudri, N , Panara, F., Myres, N. M. Parson, W., Semino, O., Salas, A., Woodward, S, R., Achilli, A. and Torroni, A. (2010). The initial peopling of the Americas: a growing number of founding mitochondrial genomes from Beringia. Genome Res 20(9):1174-1179. Pitulko, V., Nikolsky, P. A., Girya, E. Y., Basilyan, A. E., Tumskoy, V. E., Koulakov, S. A., Astakhov, S. N., Pavlova, E. Y. and Anisimov, M. A. (2004). The Yana RHS Site: Humans in the Arctic before the Last Glacial Maximum. Science 303: 52–56. Pohl, M., von Nagy, C., Perrett, A. and Pope, K. (2004) "Olmec Civilization at San Andres, Tabasco, Mexico", Foundation for the Advancement of Mesoamerican Studies, Inc. (FAMSI), accessed October 2007. Richter, C., Park, J. W. and Ames, B. N. (1988). Normal oxidative damage to mitochondrial and nuclear DNA is extensive. Proc. Natl. Acad. Sci. 85: 6465–6467. Saillard, J., Forster, P., Lynnerup, N., Bandelt, H.-J. and Nørby, S. (2000). mtDNA variation among Greenland Eskimos: The edge of the Beringian expansion. Am. J. Hum. Genet. 67: 718-726. 42
Sandoval, K., Buentello-Malo, L., Peñaloza-Espinosa, R., Avelino, H., Salas, A., Calafell, F. and Comas, D. (2009). Linguistic and maternal genetic diversity are not correlated in Native Mexicans. Hum Genet 126: 521–531. Schurr, T. G. and Sherry, S. T. (2004) Mitochondrial DNA and Y chromosome diversity and the peopling of the Americas: evolutionary and demographic evidence. Am J Hum Biol 16: 420–439. Schurr, T. G., Ballinger, S. W., Gan, Y. Y., Hodge, J. A., Merriwether, D. A., Lawrence, D. N., Knowler, W. C., Weiss, K. M. and Wallace, D. C. (1990). Amerindian Mitochondrial DNAs Have Rare Asian Mutations at High Frequencies, Suggesting They Derived from Four Primary Maternal Lineages. American Journal of Human Genetics 46: 613-623. Soares, P., Ermini, L., Thoson, N., Mormina, M., Rito, T., Röhl, A., Salas, A., Oppenheimer, A., Macalay, V. and Richards, M. B. (2009). Correcting for purifying selection: An improved human mitochondrial molecular clock. Am. J. Hum. Genet. 84: 740–759. Starikovskaya EB, Sukernik RI, Derbeneva OA, Volodko NV, Ruiz-Pesini E, Torroni A, Brown MD, Lott MT, Hosseini SH, Huoponen K and Wallace DC. (2005). Mitochondrial DNA diversity in indigenous populations of the southern extent of Siberia, and the origins of Native American haplogroups. Ann Hum Genet 69(Pt 1):67-89. Stoneking, M., Hedgecock, D., Higuchi, R. G., Vigilant, L. and Erlich, H. A. (1991). Population variation of human mtDNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes. Am. J. Hum. Genet. 48: 370– 382. Tamm, E, Kivisild, T, Reidla, M, Metspalu, M, Smith DG, Mulligan, C. J., Bravi, C. M., Rickards, O., Martinez-Labarga, C., Knusbutdinova, E. K., Fedorova, S.A., Golubenko, M. V., Stepanov, V. A., Gubina, M. A., Zhadanov, S. I., Ossipova, L. P., Damba, L., Voevoda, M. I., Dipierri, J. E., Villems, R. and Malhi, R. S. (2007). Beringian standstill and spread of Native American founders. PLoS ONE 2: e829. Torroni A et al. (1994a) Mitochondrial DNA and Y chromosome polymorphisms in 4 Native American populations from Southern Mexico. Am. J Hum. Gen. 54, 303-18. Torroni, A., Achilli A., Macaulay V., Richards, M. and Bandelt, H-J. (2006). Harvesting the fruit of the human mtDNA tree. Trends Genet 22:339–345. 43
Page 1 and 2: TARTU UNIVERSITY FACULTY OF SCIENCE
Page 3 and 4: ABBREVIATIONS bp - base pair D-loop
Page 5 and 6: 1. LITERATURE OVERVIEW 1.1 Mitochon
Page 7 and 8: One of the reasons may be, that ped
Page 9 and 10: Figure 2. Diagnostic markers of Nat
Page 11 and 12: According to it, only one small gro
Page 13 and 14: their way down to the South America
Page 15 and 16: 2. EXPERIMENTAL STUDY 2.1 Aims of t
Page 17 and 18: To determine possible contamination
Page 19 and 20: * let dry at 37ºC for 5 min *add 1
Page 21 and 22: 2.3 RESULTS AND DISCUSSION 2.3.1 Ph
Page 23 and 24: that populations have gone through
Page 25 and 26: Figure 5. Haplogroup A haplotype ne
Page 27 and 28: Figure 7. Haplogroup C haplotype ne
Page 29 and 30: 2.3.2 C4c haplogroup One Huichol in
Page 31 and 32: N 12705s 16223 R 73 11719s R0 14766
Page 33 and 34: CONCLUSIONS Mitochondrial DNA has b
Page 35 and 36: mitokondriaalne DNA. Huitšoli proo
Page 37 and 38: References Achilli, A, Perego, U. A
Page 39 and 40: Forster, P., Torroni, A., Renfrew,
Page 41: Loogvali, E. L., Kivisild, T., Marg
Page 45 and 46: SUPPLEMENTARY MATERIALS Tabel 1.1.
Page 47 and 48: Table 4.Data used for haplogroups f

Maternal variation in Huichol and Mixtec populations from Mexico

You also want an ePaper? Increase the reach of your titles

Delete template?

Save as template?