School of Engineering and Science - Jacobs University

CHAPTER I
counted out at 200-fold magnification, thus reducing counting biases against rare
species. Identification of naked dinoflagellates and especially of ciliates in Lugol’spreserved
samples is often difficult below genus level (Johansson et al., 2004), even
with the modified fixation method applied here. Therefore, problematic ciliates and
dinoflagellates were identified to genus level or, otherwise, pooled into size-dependent
groups and “morphotypes”, based on their similar shape. Mixotrophy of the ciliates was
not measured, therefore, we have no exact data on the percentage of mixotrophic ciliates
in the samples. However, up to date all mixotrophic ciliates have been shown to be
phagotrophic (Sherr & Sherr, 2002) and consequently all ciliates except Myrionecta
rubra were considered heterotrophic (Johansson et al., 2004). This species acts
essentially as a phototroph (Montagnes et al., 2008) but recent studies have shown that
it also has some phagotrophic capabilities (Park et al., 2007). The identification of
dinoflagellates was primarily based on Dodge (1982), Tomas (1996) and Hoppenrath et
al. (2009). Ciliates were determined based on Kahl (1932), Carey (1992) and
Montagnes (2003).
Also a new feature compared to the regular long-term series, the carbon content of each
taxon was estimated from pictures taken during counting. These pictures were also used
for documentation of rare and prior un-registered species and subsequent taxon
assignments. Pictures of individuals from each taxon were taken for exact biovolume
estimations: After measuring linear dimensions of each cell the biovolume was
calculated using the geometric models described by Hillebrand et al. (1999). Biovolume
was converted into carbon using the conversion factor given by Putt & Stoecker (1989)
for ciliates and Menden-Deuer & Lessard (2000) for dinoflagellates.
In vivo fluorescence as proxy for phytoplankton biomass is measured on a week-daily
basis (Algae Analyser, BBE Moldaenke, Kiel, Germany) as part of the routine
monitoring at Helgoland Roads. These data were used for the purpose of illustration of
phytoplankton food availability and are shown in the results.
For the evaluation of the microzooplankton monitoring data we compared them with the
available data of the Helgoland Roads long-term data-set on plankton. After evaluation
of the literature on the quality of this data-set (Wiltshire & Dürselen, 2004) and the
results of an unpublished revision by S. Peters and M. Scharfe, two species were
identified for the comparison: The dinoflagellate Noctiluca scintillans and the ciliate
Myrionecta rubra.
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