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Welcome to the 31st IUBS General Assembly and Conference on ...

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The <str<strong>on</strong>g>the</str<strong>on</strong>g>rapeutic utility of most first‐line antimalarial<br />

drugs has been compromised by <str<strong>on</strong>g>the</str<strong>on</strong>g> evoluti<strong>on</strong> of<br />

resistance that is often associated with multiple amino<br />

acid replacements in <str<strong>on</strong>g>the</str<strong>on</strong>g> target protein. Antifolate<br />

antimalarials target <str<strong>on</strong>g>the</str<strong>on</strong>g> metabolic enzyme dihydrofolate<br />

reductase (DHFR), part of a bifuncti<strong>on</strong>al enzyme needed<br />

for <str<strong>on</strong>g>the</str<strong>on</strong>g> syn<str<strong>on</strong>g>the</str<strong>on</strong>g>sis of tetrahydrofolate used in purine <str<strong>on</strong>g>and</str<strong>on</strong>g><br />

amino acid biosyn<str<strong>on</strong>g>the</str<strong>on</strong>g>sis. We have studied evoluti<strong>on</strong>ary<br />

pathways in <str<strong>on</strong>g>the</str<strong>on</strong>g> evoluti<strong>on</strong> of DHFR for resistance <str<strong>on</strong>g>to</str<strong>on</strong>g><br />

antifolates in <str<strong>on</strong>g>the</str<strong>on</strong>g> DHFR enzymes from<br />

Plasmodiumfalciparum <str<strong>on</strong>g>and</str<strong>on</strong>g> P. vivax, <str<strong>on</strong>g>the</str<strong>on</strong>g> most widespread<br />

<str<strong>on</strong>g>and</str<strong>on</strong>g> important malaria parasites in regard <str<strong>on</strong>g>to</str<strong>on</strong>g> public<br />

health. Our approach is based <strong>on</strong> studies in which all<br />

possible intermediates in <str<strong>on</strong>g>the</str<strong>on</strong>g> resistance pathway are<br />

created by site‐directed mutagenesis <str<strong>on</strong>g>and</str<strong>on</strong>g> assayed for<br />

<str<strong>on</strong>g>the</str<strong>on</strong>g>ir level of resistance. The resistance assays are carried<br />

out in transgenic bacteria <str<strong>on</strong>g>and</str<strong>on</strong>g> yeast carrying <str<strong>on</strong>g>the</str<strong>on</strong>g> coding<br />

sequence of <str<strong>on</strong>g>the</str<strong>on</strong>g> parasite DHFR. Evoluti<strong>on</strong>ary trajec<str<strong>on</strong>g>to</str<strong>on</strong>g>ries<br />

are determined using probabilities of fixati<strong>on</strong> based <strong>on</strong><br />

<str<strong>on</strong>g>the</str<strong>on</strong>g> relative levels of resistance. While different antifolates<br />

target <str<strong>on</strong>g>the</str<strong>on</strong>g> active site of DHFR, <str<strong>on</strong>g>the</str<strong>on</strong>g> evoluti<strong>on</strong>ary l<str<strong>on</strong>g>and</str<strong>on</strong>g>scapes<br />

for resistance are not c<strong>on</strong>gruent for different drugs. Nor<br />

are <str<strong>on</strong>g>the</str<strong>on</strong>g> resistance l<str<strong>on</strong>g>and</str<strong>on</strong>g>scapes c<strong>on</strong>gruent for enzymes<br />

from different species for <str<strong>on</strong>g>the</str<strong>on</strong>g> same drug. Our results bear<br />

generally <strong>on</strong> mechanisms of protein evoluti<strong>on</strong> in<br />

sequence space <str<strong>on</strong>g>and</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> ruggedness of evoluti<strong>on</strong>ary<br />

l<str<strong>on</strong>g>and</str<strong>on</strong>g>scapes. They also help explain observed patterns of<br />

DHFR polymorphism in natural populati<strong>on</strong>s <str<strong>on</strong>g>and</str<strong>on</strong>g> why <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

most resistant forms of <str<strong>on</strong>g>the</str<strong>on</strong>g> parasite are c<strong>on</strong>fined <str<strong>on</strong>g>to</str<strong>on</strong>g> areas<br />

of low malaria transmissi<strong>on</strong>. I will also describe <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

‘morbidostat’, a new c<strong>on</strong>tinuous‐culture device that<br />

au<str<strong>on</strong>g>to</str<strong>on</strong>g>matically selects for ever‐increasing levels of<br />

antibiotic resistance, <str<strong>on</strong>g>and</str<strong>on</strong>g> show how <str<strong>on</strong>g>the</str<strong>on</strong>g> morbidostat can<br />

be used <str<strong>on</strong>g>to</str<strong>on</strong>g> measure <str<strong>on</strong>g>the</str<strong>on</strong>g> reproducibility of evoluti<strong>on</strong> in<br />

sequence space.<br />

Experiences in accessing biological<br />

resources for n<strong>on</strong>­commercial research:<br />

results of an informal survey<br />

Sylvia I MARTINEZ <str<strong>on</strong>g>and</str<strong>on</strong>g> Susette BIBER‐KLEMM<br />

ABS program of <str<strong>on</strong>g>the</str<strong>on</strong>g> Swiss Academy of Sciences (SCNAT), Bern,<br />

Switzerl<str<strong>on</strong>g>and</str<strong>on</strong>g>. Email: sylvia.martinez@unibas.ch;<br />

Susette.Biber‐Klemm@unibas.ch<br />

After <str<strong>on</strong>g>the</str<strong>on</strong>g> adopti<strong>on</strong> of <str<strong>on</strong>g>the</str<strong>on</strong>g> B<strong>on</strong>n Guidelines in 2002 <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

Swiss Academy of Science c<strong>on</strong>ceptualised <str<strong>on</strong>g>and</str<strong>on</strong>g> started a<br />

programme <strong>on</strong> ABS awareness raising <str<strong>on</strong>g>and</str<strong>on</strong>g> capacity<br />

building for <str<strong>on</strong>g>the</str<strong>on</strong>g> scientific community in Switzerl<str<strong>on</strong>g>and</str<strong>on</strong>g>.<br />

During <str<strong>on</strong>g>the</str<strong>on</strong>g> first years many researchers complained<br />

about <str<strong>on</strong>g>the</str<strong>on</strong>g> additi<strong>on</strong>al ABS formalities <str<strong>on</strong>g>and</str<strong>on</strong>g> that access for<br />

n<strong>on</strong>‐commercial research was becoming increasingly<br />

difficult, if not impossible. In order <str<strong>on</strong>g>to</str<strong>on</strong>g> clarify <str<strong>on</strong>g>the</str<strong>on</strong>g> type of<br />

problems <str<strong>on</strong>g>and</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g>ir causes, a small series of qualitative<br />

interviews was carried out in 2009 with researchers<br />

who at <str<strong>on</strong>g>the</str<strong>on</strong>g> time were knowledgeable about <str<strong>on</strong>g>the</str<strong>on</strong>g> ABS<br />

principles. Even if not representative, <str<strong>on</strong>g>the</str<strong>on</strong>g> results show a<br />

broad array of experiences, starting from relatively<br />

smooth processing of <str<strong>on</strong>g>the</str<strong>on</strong>g> request <str<strong>on</strong>g>to</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> ab<str<strong>on</strong>g>and</str<strong>on</strong>g><strong>on</strong>ment<br />

of <str<strong>on</strong>g>the</str<strong>on</strong>g> research project due <str<strong>on</strong>g>to</str<strong>on</strong>g> processing or transacti<strong>on</strong><br />

fee difficulties.<br />

Our talk will analyse <str<strong>on</strong>g>the</str<strong>on</strong>g> positive <str<strong>on</strong>g>and</str<strong>on</strong>g> negative fac<str<strong>on</strong>g>to</str<strong>on</strong>g>rs<br />

that had an impact <strong>on</strong> ABS procedures <str<strong>on</strong>g>and</str<strong>on</strong>g> relati<strong>on</strong>s. It<br />

<str<strong>on</strong>g>the</str<strong>on</strong>g>n deduces what avenues <str<strong>on</strong>g>and</str<strong>on</strong>g> openings are available<br />

for users <str<strong>on</strong>g>and</str<strong>on</strong>g> providers of genetic resources <str<strong>on</strong>g>to</str<strong>on</strong>g> help<br />

mitigating c<strong>on</strong>ceivable problems. A specific focus will be<br />

put <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g> role of <str<strong>on</strong>g>the</str<strong>on</strong>g> respective research communities.<br />

We finally present reflecti<strong>on</strong>s regarding <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

implementati<strong>on</strong> of <str<strong>on</strong>g>the</str<strong>on</strong>g> Nagoya Pro<str<strong>on</strong>g>to</str<strong>on</strong>g>col at nati<strong>on</strong>al levels.<br />

Here suggesti<strong>on</strong>s of how <str<strong>on</strong>g>the</str<strong>on</strong>g> academic community can<br />

c<strong>on</strong>tribute <str<strong>on</strong>g>to</str<strong>on</strong>g> <str<strong>on</strong>g>the</str<strong>on</strong>g> creati<strong>on</strong> of frameworks that<br />

incorporate c<strong>on</strong>cerns of both, providers <str<strong>on</strong>g>and</str<strong>on</strong>g> academic<br />

n<strong>on</strong>‐commercial research users, are put up for<br />

discussi<strong>on</strong>.<br />

Exploring <str<strong>on</strong>g>the</str<strong>on</strong>g> impact of <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

‘roof­of­<str<strong>on</strong>g>the</str<strong>on</strong>g>­world’ <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g> diversificati<strong>on</strong> of<br />

Sou<str<strong>on</strong>g>the</str<strong>on</strong>g>ast Asian l<str<strong>on</strong>g>and</str<strong>on</strong>g> plants<br />

Harald SCHNEIDER<br />

Institute of Botany,CAS, Beijing, China. Email:<br />

h.schneider@nhm.ac.uk<br />

Orogenic events in <str<strong>on</strong>g>the</str<strong>on</strong>g> earth his<str<strong>on</strong>g>to</str<strong>on</strong>g>ry, e.g. mountain<br />

formati<strong>on</strong>, likely had a profound impact <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

assembly of biological diversity. For example, recent<br />

studies <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g> biodiversity of South America recovered<br />

str<strong>on</strong>g evidence that <str<strong>on</strong>g>the</str<strong>on</strong>g> Cenozoic rise of <str<strong>on</strong>g>the</str<strong>on</strong>g> Andeans<br />

triggered <str<strong>on</strong>g>the</str<strong>on</strong>g> rapid diversificati<strong>on</strong> of many lineages of<br />

vascular plants. However, relatively little attenti<strong>on</strong> has<br />

been given <strong>on</strong> <str<strong>on</strong>g>the</str<strong>on</strong>g> effect of <str<strong>on</strong>g>the</str<strong>on</strong>g> formati<strong>on</strong> of <str<strong>on</strong>g>the</str<strong>on</strong>g><br />

50

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