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A DOMINANT EPITOPE IN GLUTEN PEPTIDES ?<br />

19<br />

1, 13<br />

exploited to search for “toxic” gluten peptides . A-gliadin, the first fully sequenced<br />

14<br />

wheat gliadin protein , has been used as the archetypal “toxic gluten” protein source<br />

for most <strong>of</strong> these peptides (see Fig. 1). More recently, recombinant gliadins and<br />

peptides corresponding to parts <strong>of</strong> cDNA-derived gliadin sequences have been studied<br />

15<br />

. In view <strong>of</strong> the diversity <strong>of</strong> model systems, some with no relationship to <strong>coeliac</strong><br />

<strong>disease</strong> (for example fetal intestinal explants), it is not surprising that a variety <strong>of</strong><br />

different peptides have been defined as toxic. In other studies, non-specific markers <strong>of</strong><br />

toxicity (for example epithelial cell height) have been used as surrogates for<br />

immunological toxicity. If the <strong>primary</strong> hypothesis is that <strong>coeliac</strong> <strong>disease</strong> is a T cell<br />

mediated <strong>disease</strong>, rational identification <strong>of</strong> “toxic” gluten peptides in <strong>coeliac</strong> <strong>disease</strong><br />

should ideally begin with assays designed to detect HLA-DQ2 restricted CD4 T cells<br />

that secrete Th1-associated cytokines (for example interferon gamma).<br />

Intestinal T cell clones for identification <strong>of</strong> toxic gluten peptides<br />

More recently, intestinal T cell clones from duodenal biopsies <strong>of</strong> <strong>coeliac</strong> patients on<br />

gluten free diet pulsed with protease-digested gliadin have been used to search for<br />

15-17<br />

gliadin-specific T cell epitopes . These studies have revealed that intestinal T cell<br />

clones raised from gliadin-pulsed <strong>coeliac</strong> intestinal biopsies predominantly recognise<br />

12<br />

deamidated gliadin epitopes . T cell epitopes generally correspond to gliadin peptides<br />

deamidated by tissue transglutaminase (tTG). tTG is induced with inflammation and<br />

apoptosis, and irreversibly cross links proteins and peptides via glu-lys isopeptide<br />

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bonds, or directly deamidates glutamine residues to glutamate . Intestinal tissue,<br />

particularly if inflamed, is rich in tTG. Introduction <strong>of</strong> glutamate in gliadin T cell<br />

12, 15<br />

epitopes by tTG greatly enhances their binding to HLA-DQ2 .<br />

T cell epitope mapping in immune-mediated <strong>disease</strong>s<br />

In human immune-mediated <strong>disease</strong>s, T cell epitopes have been mapped using<br />

synthetic 15-20mers overlapping by 10 residues spanning known antigenic proteins in<br />

assays <strong>of</strong> peripheral blood T cells. In <strong>coeliac</strong> <strong>disease</strong>, it has been contended that gliadin-<br />

1<br />

specific peripheral blood T cells are qualitatively different from intestinal T cells .<br />

Gliadin-specific intestinal T cell clones are generally HLA-DQ2 restricted while<br />

19<br />

peripheral blood T cell clones are HLA-DR, -DQ or -DP restricted . However, these<br />

studies were performed before the realization that deamidation <strong>of</strong> gliadin was<br />

important for T cell recognition. Hence, contemporary understanding <strong>of</strong> toxic gluten<br />

peptides in the context <strong>of</strong> <strong>coeliac</strong> <strong>disease</strong> as an HLA-DQ2 associated CD4 T cellmediated<br />

<strong>disease</strong> has relied upon identification <strong>of</strong> epitopes <strong>of</strong> intestinal T cell clones<br />

using protease-digested gliadin with or without deamidation by tTG.<br />

Unfortunately, it is impossible to know whether epitopes <strong>of</strong> T cell clones are<br />

dominant or subdominant, or whether a clone is specific for only a part <strong>of</strong> a polyclonal T<br />

cell response in vivo. Furthermore, recent studies to identify epitopes <strong>of</strong> gliadin T cell<br />

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clones have used chymotrypsin-digested gliadins even though chymotrysin<br />

selectively cleaves peptide bonds following bulky hydrophobic aminoacids (the same<br />

aminoacids known to be anchor residues at the N - and C-terminal end <strong>of</strong> the HLA-DQ2<br />

1<br />

binding motif ), raising the possibility that bioactive peptides may be artefactually

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