13.07.2015 Views

computer modeling in molecular biology.pdf

computer modeling in molecular biology.pdf

computer modeling in molecular biology.pdf

SHOW MORE
SHOW LESS

You also want an ePaper? Increase the reach of your titles

YUMPU automatically turns print PDFs into web optimized ePapers that Google loves.

8 Path Energy M<strong>in</strong>imization 239ReferencesMonod, J., Wyman, J., Changeux, J. P., J. Mol. Biol. 1965, 12, 88-118.Perutz, M., Q. Rev. Biophys. 1989, 22, 138-236.Baldw<strong>in</strong>, J., Chothia, C., J. Mol. Biol. 1979, 129, 175-220.Stevens, R. C., Lipscomp, W. N., <strong>in</strong>: Molecular Structures <strong>in</strong> Biology, Diamond, R.,Toetzle, T. F., Prout, K., Richardson, J. A. (eds.), Oxford University Press, Oxford, 1993,pp. 223-259.Harvey, S. C., Nucl. Acids Res. 1983, 11, 4867-4878.Leroy, J. L., Kochoyan, M., Huynh-D<strong>in</strong>h, T., GuCron, M., J. Mol. Biol. 1988, 200,223 -238.Moe, J. G., Russu, I. M., Biochemistry 1992, 31, 8421-8428.Urry, D. W., Long, M. M., Jacobs, M., Harris, R. D., Ann. N. I: Acad. Sci. 1975, 264,203-220.Wallace, B. A., Biophys. .l 1984, 45, 114-116.Killian, J. A., de Kruijff, B., Biophys. .l 1988, 53, 111-117.Karplus, M., Evanseck, J. D., Joseph, D., Bash, P. A., Field, M. J., Faraday Discuss. R.SOC. Chem. 1992, 93, 239-248.Brooks, C. L. 111, Curr. Op<strong>in</strong>. Struct. Biol. 1993, 3, 92-98.Wade, R. C., Davis, M. E., Luty, B. A., Madura, J. D., McCammon, J. A., Biophys. J.1993, 64, 9-15.Eyr<strong>in</strong>g, H., J. Chem. Phys. 1935, 3, 107-115.Evans, M. G., Polanyi, M., Duns. Faraday SOC. 1935, 31, 875-894.Laidler, K. J., Chemical K<strong>in</strong>etics, Third edition, Harper & Row, New York, 1987.Northrup, S. H., Pear, M. R., Lee, C.-Y., McCammon, J. A., Karplus, M., Proc. Natl.Acad. Sci. USA 1982, 79, 4035-4039.McCammon, J. A., Harvey, S. C., Dynamics of Prote<strong>in</strong>s and Nucleic Acids, CambridgeUniversity Press, Cambridge, 1987.Elber, R., J. Chem. Phys. 1990, 93, 4312-4321.Verkhivker, G., Elber, R., Nowak, W., J. Chem. Phys. 1992, 97, 7838-7841.Elber, R., Karplus, M., Science 1987, 235, 318-321.McIver, J. W. Jr., Komornicki, A., J. Am. Chem. SOC. 1972, 94, 2625-2633.Popp<strong>in</strong>ger, D., Chem. Phys. Lett. 1975, 35, 550-554.Muller, K., Brown, L. D., Theor. Chim. Acta 1979, 53, 75-93.Cerjan, C. J., Miller, W. H., J. Chem. Phys. 1981, 75, 2800-2806.Simons, J., Jorgensen, P., Taylor, H., Ozment, J., J. Phys. Chem. 1983, 87, 2745-2753.Nguyen, D. T., Case, D. A., J. Phys. Chem. 1985, 89, 4020-4026.Bell, S., Crighton, J. S., J. Chem. Phys. 1984, 80, 2464-2475.[29] Gel<strong>in</strong>, B. R., Karplus, M., Proc. Natl. Acad. Sci. USA 1975, 72, 2002-2006.[30] Ha, S. N., Madsen, L. J., Brady, J. W., Biopolymers 1988, 27, 1927-1952.[31] French, A. D., Tran, V., Biopolymers 1990, 29, 1599-1611.[32] Smart, 0. S., Ak<strong>in</strong>s, J., Blow, D. M., Prote<strong>in</strong>s 1992, 13, 100-111.[33] Gabb, H. A., Harvey, S. C., J. Am. Chem. SOC. 1993, 115, 4218-4227.[34] Harvey, S. C., Gabb, H. A., Biopolymers 1993, 33, 1167-1172.[35] Miiller, K., Angew. Chem. Znt. Ed. Engl. 1980, 19, 1-78.[36] Smart, 0. S., Goodfellow, J. M., Mol. Simul. 1995, <strong>in</strong> press.[37] S<strong>in</strong>clair, J. E., Fletcher, R., J. Phys. C 1974, 7, 864-870.[38] Smart, 0. S., Ph. D. Thesis, University of London, 1991.

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!