computer modeling in molecular biology.pdf

34 Tim J. I! Hubbard and Arthur M. Lesk[37] Holm, L., Sander, C., Proteins 1992, 14, 213-223.[38] Pickett, S. D. et al., J. Mol. Biol. 1992, 228, 170-187.[39] Lesk, A. M. et al., Proteins 1989, 5, 139-148.[40] Wilmanns, M., Eisenberg, D., Proc. Natl. Acad. Sci. USA 1993, 90, 1379-1383.[41] Rippmann, F. et al., EMBO J. 1991, 10, 1053-1059.[42] Lesk, A. M., Protein Architecture: A Practical Approach, IRL Press, Oxford, 1991.[43] Lesk, A. M., Chothia, C., Philos. Trans. R. SOC. (London) 1986, 317, 345-356.[44] Jones, T. A., Thirup, S., EMBO J. 1986, 5, 819-822.[45] Zuker, M., J. Mol. Biol. 1991, 221, 403-420.[46] Saqi, M. A. et al., Protein Eng. 1992, 5, 305-311.[47] Venkatachalam, C., Biopolymers 1968, 6, 1425 - 1436.[48] Rose, G. D. et al., Adv. Protein Chem. 1985, 37, 1-109.[49] Sibanda, B. L., Thornton, J. M., J. Mol. Biol. 1985, 316, 170-174.[50] Efimov, A. V., Mol. Biol. (USSR) 1986, 20, 208-216.[51] Leszczynski, J. F., Rose, G. D., Science 1986, 234, 849-855.[52] Chothia, C., Lesk, A. M., J. Mol. Biol. 1987, 196, 901-917.[53] Wilmot, C. M., Thornton, J. M., J. Mol. Biol. 1988, 203, 221-232.[54] Milner-White, E. J. et al., J. Mol. Biol. 1988, 204, 777-782.[55] Sibanda, B. L. et al., J. Mol. Biol. 1989, 206, 759-777.[56] Sibanda, B. L., Thornton, J. M., J. Mol. Biol. 1993, 229, 428-447.[57] Tramontano, A. et al,, Proteins 1989, 6, 382-394.[58] Tramontano, A. et al., J. Mol. Biol. 1990, 215, 175-182.[59] Bruccoleri, R. E., Karplus, M., Biopolymers 1987, 26, 137-168.[60] Fine, R. M. et al., Proteins 1986, I, 342-362.[61] Moult, J., James, M. N., Proteins 1986, I, 146-163.[62] Bruccoleri, R. E. et al., Nature 1988, 335, 564-568.[63] Topham, C. M. et al., Biochem. SOC. Symp. 1990, 57, 1-9.[64] Summers, N. L., Karplus, M., Methods Enzymol. 1991, 202, 156-204.[65] Levitt, M., J. Mol. Biol. 1992, 226, 507-533.[66] Chothia, C. et al., Nature 1989, 342, 877-883.[67] Wilson, C. et al., J. Mol. Biol. 1993, 229, 996-1006.[68] Reid, L. S., Thornton, J. M., Proteins 1989, 5, 170-182.[69] Dayringer, H. E. et al., J. Mol. Graphics 1986, 4, 82-87.[70] Vriend, G., J. Mol. Graphics 1990, 8, 52-56.[71] Jones, T. A. et al., in: Crystallographic and Modelling Methods in Molecular Design,199. Bugg, C. E. and Ealick, S. E. (eds.), New York, Springer-Verlag, 1990, pp. 189-199.[72] Sutcliffe, M. J. et al., Protein Eng. 1987a, 1, 377-384.[73] Sutcliffe, M. J. et al., Protein Eng. 1987b, I, 385-392.[74] Zvelebil, M. J. et al., J. Mol. Biol. 1987, 195, 957-961.[75] Niermann, T., Kirschner, K., Protein Eng. 1991, 4, 359-370.[76] Knighton, D. R. et al., Science 1991, 253, 407-414.[77] Fasman, G., in: Prediction of Protein Structure and the Principles of Protein Conformation,Fasman, G. (ed.), New York, Plenum, 1989, pp. 193-316.[78] Barton, G. J. et al., Eur. J Biochem. 1991, 198, 749-760.[79] Russell, R. B. et al., FEBS Lett. 1992, 304, 15-20.[SO] Baumann, G. et al., Protein Eng. 1989, 2, 329-334.[81] Gregoret, L. M., Cohen, F. E., J. Mol. Biol. 1990, 211, 959-974.[82] Novotny, J. et al., Proteins 1988, 4, 19-30.[83] Chiche, L. et al., Proc. Natl. Acad. Sci. USA 1990, 87, 3240-3243.[84] Oobatake, M., Ooi, T., Prog. Biophys. Mol. Biol. 1993, 59, 237-284.