Annual Scientific Report 2015

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SERVICE TEAMS TRAINING PROGRAMME RESEARCH GROUPS INDUSTRY PROGRAMME EXTERNAL-FACING ACTIVITIES CONTENTS Research 32 2015 EMBL-EBI Annual Scientific Report
“ It would be a considerable loss not to be able to call on [EMBL-EBI’s] expertise at the leading edge of research, and would be a huge setback to innovation and data extrapolation for both experienced and novice bioinformaticians and researchers. ” From the EMBL-EBI Impact survey, 2015 2015 EMBL-EBI Annual Scientific Report 33
Page 1 and 2: The European Bioinformatics Institu
Page 3 and 4: SERVICE TEAMS TRAINING PROGRAMME RE
Page 5 and 6: Foreword We are pleased to present
Page 7 and 8: awareness amongst some of our stron
Page 9 and 10: Chemical biology The 17 million nov
Page 11 and 12: The most extensive catalogue of str
Page 13 and 14: “ EMBL -EBI services are the back
Page 15 and 16: European Nucleotide Archive The ENA
Page 17 and 18: Vertebrate Genomics Paul Flicek Bro
Page 19 and 20: Functional Genomics Alvis Brazma
Page 21 and 22: Pfam Pfam is a database of protein
Page 23 and 24: Protein Data Bank in Europe Gerard
Page 25 and 26: MetaboLights MetaboLights is a data
Page 27 and 28: Proteomics Services and Molecular I
Page 29 and 30: BioSamples The BioSamples database
Page 31 and 32: “ EMBL -EBI is a critical mass of
Page 33: EMBL International PhD Programme at
Page 37 and 38: The Birney group used methods devel
Page 39 and 40: Marioni group • Improved and exte
Page 41 and 42: “ Because I work for a micro biot
Page 43 and 44: Industry workshops • In silico AD
Page 45 and 46: The work of our institute relies on
Page 47 and 48: Web production Rodrigo Lopez System
Page 49 and 50: 2015 EMBL-EBI Annual Scientific Rep
Page 51 and 52: Capital investment Support from the
Page 53 and 54: In 2015 our core data resources con
Page 55 and 56: Joint publications Most of our 299
Page 57 and 58: One from Many: Perspectives on a Mu
Page 61 and 62: European Nucleotide Archive • Mar
Page 63 and 64: Technical Services Cluster Scientif
Page 65 and 66: Expression Atlas • Oregon State U
Page 67 and 68: Photo: Uma Maheswari 2015 EMBL-EBI
Page 71 and 72: 037. Chiapparino A, Maeda K, Turei
Page 73 and 74: 115. Jakubec D, Hostas J, Laskowski
Page 75 and 76: 192. Perez-Riverol Y, Xu QW, Wang R
Page 77 and 78: 269. van den Berg BA, Reinders MJ,
Page 79 and 80: Director Ewan Birney Admininstratio
Page 83 and 84: Guy Cochrane European Nucleotide Ar
Page 85 and 86:
Vertebrate Genomics Research The mo
Page 87 and 88:
Daniel Zerbino Ensembl Genome Analy
Page 89 and 90:
Future plans We will continue to de
Page 91 and 92:
Andy Yates Genome Technology and In
Page 93 and 94:
Paul Kersey Non-vertebrate Genomics
Page 95 and 96:
Justin Paschall Variation Archive M
Page 97 and 98:
Alvis Brazma Functional Genomics Ph
Page 99 and 100:
Ugis Sarkans Functional Genomics De
Page 101 and 102:
Robert Petryszak Gene Expression MP
Page 103 and 104:
Rob Finn Sequence Families PhD in B
Page 105 and 106:
Maria-Jesus Martin Protein Function
Page 107 and 108:
Claire O’Donovan Protein Function
Page 109 and 110:
(such as the on-going EMDataBank Ma
Page 111 and 112:
Sameer Velankar PDBe Content and In
Page 113 and 114:
containing the mapping between comp
Page 115 and 116:
of 14 leading European labs in Meta
Page 117 and 118:
Henning Hermjakob Proteomic service
Page 119 and 120:
coimmunoprecipitation coimmunopreci
Page 121 and 122:
development of Europe PMC as a plat
Page 123 and 124:
Mouse informatics In 2015 we contin
Page 125 and 126:
2015 EMBL-EBI Annual Scientific Rep
Page 127 and 128:
Train online, EMBL-EBI’s web-base
Page 129 and 130:
Nils Koelling Quantitative genetics
Page 131 and 132:
Page 133 and 134:
Pedro Beltrao PhD in Biology, Unive
Page 135 and 136:
Ewan Birney PhD 2000, Wellcome Trus
Page 137 and 138:
Anton Enright PhD in Computational
Page 139 and 140:
Nick Goldman PhD University of Camb
Page 141 and 142:
John Marioni PhD in Applied Mathema
Page 143 and 144:
Julio-Saez Rodriguez PhD University
Page 145 and 146:
Oliver Stegle PhD in Physics, Unive
Page 147 and 148:
Future plans The Teichmann group wi
Page 149 and 150:
findings regarding association were
Page 151 and 152:
Page 153 and 154:
Future plans The Industry Programme
Page 155 and 156:
Page 157 and 158:
Reporting on usage We further devel
Page 159 and 160:
to find the support they need. The
Page 161 and 162:
Petteri Jokinen Systems & Networkin
Page 163 and 164:
Standby Facility and Database Disas
Page 165 and 166:
External Relations leads on brand a
Page 167 and 168:
Mark Green EMBL-EBI Administration
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Annual Scientific Report 2015

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