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Annual Scientific Report 2015

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115. Jakubec D, Hostas J, Laskowski RA, et al. (<strong>2015</strong>) Large-scale<br />

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120. Kafkas Ş, Kim JH, Pi X, et al. (<strong>2015</strong>) Database citation<br />

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123. Kersey PJ, Allen JE, Armean I, et al. (<strong>2015</strong>) Ensembl Genomes<br />

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124. Kim JK, Cho Y, Lee M, et al. (<strong>2015</strong>) BetaCavityWeb: a<br />

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125. Kim JK, Kolodziejczyk AA, Illicic T, et al. (<strong>2015</strong>) Characterizing<br />

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126. Kirsanova C, Brazma A, Rustici G, et al. (<strong>2015</strong>) Cellular<br />

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Bioinformatics 31:2736-2740. doi:10.1093/bioinformatics/btv199<br />

127. Kiselev VY, Juvin V, Malek M, et al. (<strong>2015</strong>) Perturbations of<br />

PIP3 signalling trigger a global remodelling of mRNA landscape<br />

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128. Kolodziejczyk AA, Kim JK, Svensson V, et al. (<strong>2015</strong>) The<br />

technology and biology of single-cell RNA sequencing. Mol. Cell<br />

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129. Kolodziejczyk AA, Kim JK, Tsang JC, et al. (<strong>2015</strong>) Single<br />

cell RNA-sequencing of pluripotent states unlocks modular<br />

transcriptional variation. Cell Stem Cell 17:471-485. doi:10.1016/j.<br />

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130. Kopf A, Bicak M, Kottmann R, et al. (<strong>2015</strong>) The Ocean Sampling<br />

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131. Krajewski P, Chen D, Ćwiek H, et al. (<strong>2015</strong>) Towards<br />

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132. Kretzmer H, Bernhart SH, Wang W, et al. (<strong>2015</strong>) DNA methylome<br />

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methylated regions linked to somatic mutation and transcriptional<br />

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133. Krupska I, Bruford EA, Chaqour B (<strong>2015</strong>) Eyeing the Cyr61/<br />

CTGF/NOV (CCN) group of genes in development and diseases:<br />

highlights of their structural likenesses and functional dissimilarities.<br />

Hum Genomics 9: 24. doi:10.1186/s40246-015-0046-y<br />

134. Kubagawa H, Carroll MC, Jacob CO, et al. (<strong>2015</strong>) Nomenclature<br />

of Toso, Fas apoptosis inhibitory molecule 3, and IgM FcR. J.<br />

Immunol. 194:4055-4057. doi:10.4049/jimmunol.1500222<br />

135. Kulis M, Merkel A, Heath S, et al. (<strong>2015</strong>) Whole-genome fingerprint<br />

of the DNA methylome during human B cell differentiation. Nat.<br />

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136. Kurbatova N, Mason JC, Morgan H, et al. (<strong>2015</strong>) PhenStat: A tool<br />

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137. Lai M, Brun D, Edelstein SJ, et al. (<strong>2015</strong>) Modulation of calmodulin<br />

lobes by different targets: an allosteric model with hemiconcerted<br />

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138. Lappalainen I, Almeida-King J, Kumanduri V, et al. (<strong>2015</strong>) The<br />

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139. Laskowski RA, Thornton JM (<strong>2015</strong>) Proteins: interaction<br />

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140. Lawson CL, Patwardhan A, Baker ML, et al. (<strong>2015</strong>) EMDataBank<br />

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141. Le V, Khanh Nhu NT, Cerdeno-Tarraga A, et al. (<strong>2015</strong>) Genetic<br />

characterization of three qnrS1-harbouring multidrug-resistance<br />

plasmids and qnrS1-containing transposons circulating in Ho Chi<br />

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142. Leha A, Moens N, Meleckyte R, et al. (<strong>2015</strong>) A high-content<br />

platform to characterise human induced pluripotent stem cell lines.<br />

Methods (in press); doi:10.1016/j.ymeth.<strong>2015</strong>.11.012<br />

143. Lehmann KV, Kahles A, Kandoth C, et al. (<strong>2015</strong>) Integrative<br />

genome-wide analysis of the determinants of RNA splicing in<br />

kidney renal clear cell carcinoma. Pac Symp Biocomput :44-55.<br />

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USA, 4–8 January <strong>2015</strong>. In: Altman RB, Dunker AK, Hunter L,<br />

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144. Leigh-Brown S, Goncalves A, Thybert D, et al. (<strong>2015</strong>) Regulatory<br />

divergence of transcript isoforms in a mammalian model system.<br />

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145. Lener T, Gimona M, Aigner L, et al. (<strong>2015</strong>) Applying extracellular<br />

vesicles based therapeutics in clinical trials - an ISEV position<br />

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146. Li H, Tong P, Gallegos J, et al. (<strong>2015</strong>) PAND: A distribution<br />

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147. Li HJ, Leung KS, Wong MH, et al. (<strong>2015</strong>) Improving AutoDock Vina<br />

using Random Forest: The growing accuracy of binding affinity<br />

prediction by the effective exploitation of larger data sets. Mol. Inf.<br />

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148. Li P, Seneviratne CJ, Alpi E, et al. (<strong>2015</strong>) Delicate metabolic control<br />

and coordinated stress response critically determine antifungal<br />

tolerance of Candida albicans biofilm persisters. Antimicrob.<br />

Agents Chemother. 59:6101-6112. doi:10.1128/aac.00543-15<br />

149. Li WZ, Cowley A, Uludag M, et al. (<strong>2015</strong>) The EMBL-EBI<br />

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150. Lizio M, Harshbarger J, Shimoji H, et al. (<strong>2015</strong>) Gateways to the<br />

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151. Lloyd KCK, Meehan T, Beaudet A, et al. (<strong>2015</strong>) Precision medicine:<br />

Look to the mice. Science 349(6246):390<br />

152. Lowe R, Slodkowicz G, Goldman N, et al. (<strong>2015</strong>) The human blood<br />

DNA methylome displays a highly distinctive profile compared with<br />

other somatic tissues. Epigenetics 10:274-281. doi:10.1080/1559<br />

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153. MacNamara A, Stein F, Feng S, et al. (<strong>2015</strong>) A single-cell model of<br />

PIP3 dynamics using chemical dimerization. Bioorg. Med. Chem.<br />

23:2868-2876. doi:10.1016/j.bmc.<strong>2015</strong>.04.074<br />

<strong>2015</strong> EMBL-EBI <strong>Annual</strong> <strong>Scientific</strong> <strong>Report</strong> 71

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