Protein Data Bank in Europe PDBe is a partner in the World Wide Protein Data Bank (wwPDB). Other partners include: • BioMagResBank, University of Wisconsin, Madison, United States • PDBj at Osaka University, Japan • Research Collaboratory for Structural Bioinformatics, United States PRIDE • Faculty of Life Sciences, The University of Manchester, United Kingdom • Ghent University, Ghent, Belgium • The Yonsei Proteome Research Center, Yonsei University, Seoul, Korea RNAcentral • dictyBase at Northwestern University, Chicago, United States • the Greengenes Consortium, a collaboration with University of Colorado, Boulder, United States; University of Queensland, Australia; and Second Genome Inc., San Francisco, United States • gtRNAdb at University of California Santa Cruz, Santa Cruz, United States • LNCipedia at Ghent University, Ghent, Belgium • lncRNAdb at Garvan Institute of Medical Research, Darlinghurst, Australia • miRBase at University of Manchester, United Kingdom • Modomics at International Institute of Molecular and Cell Biology, Warsaw, Poland • NONCODE at Institute of Biophysics at Chinese Academy of Sciences, Beijing, China • Pombase at University College London and the University of Cambridge, UK • Ribosomal Database Project at Michigan State University, East Lansing, United States • RefSeq at National Center for Biotechnology Information, Bethesda, United States • Saccharomyces Genome Database, Stanford University, Stanford, United States • SILVA at Max Planck Institute for Marine Microbiology, Bremen, Germany • snOPY at University of Miyazaki, Miyazaki, Japan • SRPDB at University of Texas Health Science Center, San Antonio, United States • The Arabidopsis Information Resource (TAIR) at Phoenix Bioinformatics Corporation, Redwood City, United States • tmRNA Website at Sandia National Laboratories, Livermore, United States • Vega at the Wellcome Trust Sanger Institute, Hinxton, United Kingdom • Wormbase, a collaboration with the California Institute of Technology and Washington University, United States; Ontario Institute for Cancer Research, Canada; the Wellcome Trust Sanger Institute and Oxford University, United Kingdom • RNAcentral databases at EMBL-EBI Reactome • New York University Medical Center, New York, United States • Ontario Institute for Cancer Research, Toronto, Canada • Reactome at Cold Spring Harbor Laboratory, United States • Reactome at EMBL-EBI Rfam • Protein Data Bank in Europe (PDBe) • European Nucleotide Archive (ENA) UniProt: The Universal Protein Resource UniProt at EMBL-EBI is part of the UniProt Consortium. Other partners include: • UniProt at the Protein Information Resource, Georgetown University Medical Centre, Washington, DC, United States • UniProt at the Protein Information Resource, University of Delaware, United States • UniProt at the SIB Swiss Institute of Bioinformatics, Geneva, Switzerland 64 <strong>2015</strong> EMBL-EBI <strong>Annual</strong> <strong>Scientific</strong> <strong>Report</strong>
Photo: Uma Maheswari <strong>2015</strong> EMBL-EBI <strong>Annual</strong> <strong>Scientific</strong> <strong>Report</strong> 65
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The European Bioinformatics Institu
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SERVICE TEAMS TRAINING PROGRAMME RE
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Foreword We are pleased to present
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awareness amongst some of our stron
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Chemical biology The 17 million nov
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The most extensive catalogue of str
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“ EMBL -EBI services are the back
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Henning Hermjakob Proteomic service
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coimmunoprecipitation coimmunopreci
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development of Europe PMC as a plat
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Mouse informatics In 2015 we contin
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2015 EMBL-EBI Annual Scientific Rep
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Train online, EMBL-EBI’s web-base
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Nils Koelling Quantitative genetics
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2015 EMBL-EBI Annual Scientific Rep
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Pedro Beltrao PhD in Biology, Unive
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Ewan Birney PhD 2000, Wellcome Trus
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Anton Enright PhD in Computational
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Nick Goldman PhD University of Camb
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John Marioni PhD in Applied Mathema
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Julio-Saez Rodriguez PhD University
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Oliver Stegle PhD in Physics, Unive
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Future plans The Teichmann group wi
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findings regarding association were
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Future plans The Industry Programme
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2015 EMBL-EBI Annual Scientific Rep
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Reporting on usage We further devel
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to find the support they need. The
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Petteri Jokinen Systems & Networkin
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Standby Facility and Database Disas
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External Relations leads on brand a
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Mark Green EMBL-EBI Administration