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Annual Scientific Report 2015

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269. van den Berg BA, Reinders MJ, de Ridder D, et al. (<strong>2015</strong>) Insight<br />

into neutral and disease-associated human genetic variants<br />

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270. van Roosmalen W, Le Devedec SE, Golani O, et al. (<strong>2015</strong>) Tumor<br />

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271. Vaudel M, Verheggen K, Csordas A, et al. (<strong>2015</strong>) Exploring the<br />

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272. Velankar S, van Ginkel G, Alhroub Y, et al. (<strong>2015</strong>) PDBe: improved<br />

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273. Videla S, Guziolowski C, Eduati F, et al. (<strong>2015</strong>) Learning Boolean<br />

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275. Villar D, Berthelot C, Aldridge S, et al. (<strong>2015</strong>) Enhancer evolution<br />

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276. Villaveces JM, Jimenez RC, Porras P, et al. (<strong>2015</strong>) Merging<br />

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277. Villaverde AF, Henriques D, Smallbone K, et al. (<strong>2015</strong>) BioPreDynbench:<br />

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systems biology BMC Syst. Biol. 9:8. doi:10.1186/s12918-015-<br />

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278. Viti C, Decorosi F, Marchi E, et al. (<strong>2015</strong>) High-throughput<br />

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279. Vitsios DM, Enright AJ (<strong>2015</strong>) Chimira: Analysis of small RNA<br />

sequencing data and microRNA modifications. Bioinformatics<br />

31:3365-3367. doi:10.1093/bioinformatics/btv380<br />

280. Vitsios DM, Psomopoulos FE, Mitkas PA, et al. (<strong>2015</strong>) Inference<br />

of pathway decomposition across multiple species through<br />

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281. Vizcaíno JA, Csordas A, Del-Toro N, et al. (<strong>2015</strong>) 2016 update<br />

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282. Vuckovic D, Gasparini P, Soranzo N, et al. (<strong>2015</strong>) MultiMeta: an<br />

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association studies. Bioinformatics 31:2754-2756. doi:10.1093/<br />

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283. Wagih O, Parts L (<strong>2015</strong>) Genetic interaction scoring procedure for<br />

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284. Wagih O, Sugiyama N, Ishihama Y, et al. (<strong>2015</strong>) Uncovering<br />

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285. Warren AS, Aurrecoechea C, Brunk B, et al. (<strong>2015</strong>) RNA-Rocket:<br />

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Bioinformatics 31:1496-1498. doi:10.1093/bioinformatics/btv002<br />

286. Warren WC, Jasinska AJ, Garcia-Perez R, et al. (<strong>2015</strong>) The<br />

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287. Wickramasinghe VO, Gonzàlez-Porta M, Perera D, et al. (<strong>2015</strong>)<br />

Regulation of constitutive and alternative mRNA splicing across<br />

the human transcriptome by PRPF8 is determined by 5’ splice site<br />

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288. Wilkes EH, Terfve C, Gribben JG, et al. (<strong>2015</strong>) Empirical inference<br />

of circuitry and plasticity in a kinase signaling network. Proc. Natl.<br />

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289. Wimalaratne SM, Bolleman J, Juty N, et al. (<strong>2015</strong>)<br />

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Bioinformatics 31:1875-1877. doi:10.1093/bioinformatics/btv064<br />

290. Witte S, Bradley A, Enright AJ, et al. (<strong>2015</strong>) High-density P300<br />

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291. Woo YH, Ansari H, Otto TD, et al. (<strong>2015</strong>) Chromerid genomes<br />

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292. Wood C, Burnley T, Patwardhan A, et al. (<strong>2015</strong>) Collaborative<br />

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293. Xie X, Stubbington MJ, Nissen JK, et al. (<strong>2015</strong>) The regulatory T<br />

cell lineage factor Foxp3 regulates gene expression through several<br />

distinct mechanisms mostly independent of direct DNA binding.<br />

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294. Yachdav G, Goldberg T, Wilzbach S, et al. (<strong>2015</strong>) Anatomy of<br />

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295. Yates A, Akanni W, Amode MR, et al. (<strong>2015</strong>) Ensembl 2016.<br />

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296. Zepeda-Mendoza CJ, Mukhopadhyay S, Wong ES, et al. (<strong>2015</strong>)<br />

Quantitative analysis of chromatin interaction changes upon a 4.3<br />

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297. Zerbino DR, Wilder SP, Johnson N, et al. (<strong>2015</strong>) The Ensembl<br />

regulatory build. Genome Biol. 16:56. doi:10.1186/s13059-015-<br />

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298. Ziehm M, Ivanov DK, Bhat A, et al. (<strong>2015</strong>) SurvCurv database<br />

and online survival analysis platform update. Bioinformatics<br />

31:3878-3880. doi:10.1093/bioinformatics/btv463<br />

299. Zirbel CL, Roll J, Sweeney BA, et al. (<strong>2015</strong>) Identifying novel<br />

sequence variants of RNA 3D motifs. Nucleic Acids Res.<br />

43:7504-7520. doi:10.1093/nar/gkv651<br />

<strong>2015</strong> EMBL-EBI <strong>Annual</strong> <strong>Scientific</strong> <strong>Report</strong> 75

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