Annual Scientific Report 2015

Protein Data Bank in Europe
PDBe is a partner in the World Wide Protein Data Bank
(wwPDB). Other partners include:
• BioMagResBank, University of Wisconsin, Madison, United
States
• PDBj at Osaka University, Japan
• Research Collaboratory for Structural Bioinformatics,
United States
PRIDE
• Faculty of Life Sciences, The University of Manchester,
United Kingdom
• Ghent University, Ghent, Belgium
• The Yonsei Proteome Research Center, Yonsei University,
Seoul, Korea
RNAcentral
• dictyBase at Northwestern University, Chicago, United
States
• the Greengenes Consortium, a collaboration with
University of Colorado, Boulder, United States; University
of Queensland, Australia; and Second Genome Inc., San
Francisco, United States
• gtRNAdb at University of California Santa Cruz, Santa
Cruz, United States
• LNCipedia at Ghent University, Ghent, Belgium
• lncRNAdb at Garvan Institute of Medical Research,
Darlinghurst, Australia
• miRBase at University of Manchester, United Kingdom
• Modomics at International Institute of Molecular and Cell
Biology, Warsaw, Poland
• NONCODE at Institute of Biophysics at Chinese Academy
of Sciences, Beijing, China
• Pombase at University College London and the University of
Cambridge, UK
• Ribosomal Database Project at Michigan State University,
East Lansing, United States
• RefSeq at National Center for Biotechnology Information,
Bethesda, United States
• Saccharomyces Genome Database, Stanford University,
Stanford, United States
• SILVA at Max Planck Institute for Marine Microbiology,
Bremen, Germany
• snOPY at University of Miyazaki, Miyazaki, Japan
• SRPDB at University of Texas Health Science Center, San
Antonio, United States
• The Arabidopsis Information Resource (TAIR) at Phoenix
Bioinformatics Corporation, Redwood City, United States
• tmRNA Website at Sandia National Laboratories,
Livermore, United States
• Vega at the Wellcome Trust Sanger Institute, Hinxton,
United Kingdom
• Wormbase, a collaboration with the California Institute
of Technology and Washington University, United States;
Ontario Institute for Cancer Research, Canada; the
Wellcome Trust Sanger Institute and Oxford University,
United Kingdom
• RNAcentral databases at EMBL-EBI
Reactome
• New York University Medical Center, New York, United
States
• Ontario Institute for Cancer Research, Toronto, Canada
• Reactome at Cold Spring Harbor Laboratory, United States
• Reactome at EMBL-EBI
Rfam
• Protein Data Bank in Europe (PDBe)
• European Nucleotide Archive (ENA)
UniProt: The Universal
Protein Resource
UniProt at EMBL-EBI is part of the UniProt
Consortium. Other partners include:
• UniProt at the Protein Information Resource, Georgetown
University Medical Centre, Washington, DC, United States
• UniProt at the Protein Information Resource, University of
Delaware, United States
• UniProt at the SIB Swiss Institute of Bioinformatics,
Geneva, Switzerland
64
2015 EMBL-EBI Annual Scientific Report