Annual Scientific Report 2015
EMBL_EBI_ASR_2015_DigitalEdition
EMBL_EBI_ASR_2015_DigitalEdition
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SERVICE TEAMS TRAINING PROGRAMME RESEARCH GROUPS INDUSTRY PROGRAMME<br />
EXTERNAL-FACING<br />
ACTIVITIES<br />
CONTENTS<br />
Major Database Collaborations<br />
ArrayExpress<br />
• Gene Expression Omnibus, National Center for<br />
Biotechnology Information, Bethesda, United States<br />
BioModels Database<br />
• Database of Ouantitative Cellular Signalling, National<br />
Center for Biological Sciences, Bengaluru, India<br />
• JWS Online, Stellenbosch University, South Africa<br />
• Physiome Model Repository, Auckland Bioengineering<br />
Institute, New Zealand<br />
• The Virtual Cell, University of Connecticut Health Center,<br />
Farmington, United States<br />
ChEBI<br />
• ChemIdPlus, National Library of Medicine, Bethesda,<br />
United States<br />
• DrugBank, University of Alberta, Edmonton, Canada<br />
• Immune Epitope Database (IEDB) at La Jolla Institute for<br />
Allergy and Immunology, United States<br />
• KEGG Compound, Kyoto University Bioinformatics Centre,<br />
Kyoto, Japan<br />
• OBI Ontology Consortium<br />
• PubChem, National Institutes of Health, Bethesda, United<br />
States<br />
• UniPathways, Swiss Institute of Bioinformatics, Geneva,<br />
Switzerland<br />
ChEMBL<br />
• BindingDB, University of California San Diego, United<br />
States<br />
• CanSAR, Institute of Cancer Research, London, United<br />
Kingdom<br />
• PubChem, National Center for Biotechnology Information,<br />
Bethesda, United States<br />
Ensembl<br />
Here we list collaborations with the major genome<br />
centres and representative collaborations for the human,<br />
mouse, rat and chicken genomes. There are many others.<br />
• Baylor College of Medicine, Houston, United States<br />
• Broad Institute, Cambridge, United States<br />
• DOE Joint Genome Institute, Walnut Creek, United States<br />
• Ensembl at the Wellcome Trust Sanger Institute, Hinxton,<br />
Cambridge, United Kingdom<br />
• Genome Browser at the University of California, Santa Cruz,<br />
United States<br />
• Map Viewer at the National Center for Biotechnology<br />
Information, Bethesda, United States<br />
• Mouse Genome Informatics at the Jackson Laboratory, Bar<br />
Harbor, United States<br />
• Rat Genome Database at the Medical College of Wisconsin,<br />
Milwaukee, United States<br />
• The Roslin Institute, Midlothian, Scotland, United Kingdom<br />
Ensembl Genomes<br />
• Gramene at Cold Spring Harbor Laboratory, United States<br />
• PomBase with University College London and the University<br />
of Cambridge, United Kingdom<br />
• PhytoPath with Rothamsted Research, Harpenden, United<br />
Kingdom<br />
• VectorBase: a collaboration with University of Notre Dame,<br />
United States; Harvard University, United States; Institute<br />
of Molecular Biology and Biochemistry, Greece; University<br />
of New Mexico, United States; and Imperial College London,<br />
United Kingdom<br />
• WormBase, a collaboration with the California Institute<br />
of Technology and Washington University, United States;<br />
Ontario Institute for Cancer Research, Canada; Wellcome<br />
Trust Sanger Institute and Oxford University, United<br />
Kingdom<br />
European Nucleotide<br />
Archive (ENA)<br />
The ENA is part of the International Nucleotide<br />
Sequence Database Collaboration. Other partners<br />
include:<br />
• National Center for Biotechnology Information, Bethesda,<br />
United States (GenBank, Trace Archive and Sequence Read<br />
Archive)<br />
• National Institute of Genetics, Mishima, Japan (DNA<br />
DataBank of Japan, Trace Archive and Sequence Read<br />
Archive)<br />
Other ENA collaborations:<br />
• Catalogue of Life<br />
• Genomics Standards Consortium<br />
62<br />
<strong>2015</strong> EMBL-EBI <strong>Annual</strong> <strong>Scientific</strong> <strong>Report</strong>
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