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ý.,,: V. ý ýý . - Nottingham eTheses - University of Nottingham

ý.,,: V. ý ýý . - Nottingham eTheses - University of Nottingham

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LIST OF FIGURES<br />

Figure I. I. Diagrammatic representation demonstrating the relationship between the<br />

different symbols used in the formulae in Table 1.2. Reproduced from Priest and Austin<br />

(1995) ................................................................................................<br />

28<br />

Figure 1.2. Representation <strong>of</strong> molecular taxonomy. Diagram outlining the molecular<br />

technique <strong>of</strong> identifying relationships between species<br />

.................................<br />

29<br />

Figure 2.1a A map <strong>of</strong> the Vestfold Hills, Eastern Antarctica, showing location <strong>of</strong> the 38<br />

sampled lakes (reproduced with permission <strong>of</strong> the Australian Antarctic data centre) ....<br />

34<br />

Figure 2.1b A map <strong>of</strong> the Larsemann Hills, Eastern Antarctica, showing the location <strong>of</strong><br />

the 2 sampled lakes (reproduced with permission from the Australian Antarctic data<br />

centre) ................................................................................................<br />

35<br />

Figure 2.1c A map <strong>of</strong> the epishelf lake, Beaver Lake, MacRobertson Land (modified<br />

from Laybourn-Parry et al., 2001b) ............................................................<br />

36<br />

Figure 2.2. Diagrammatic representation <strong>of</strong> the ARDRA procedure<br />

...............<br />

44<br />

Figure 2.3. Lane delineation image from 1D elite gel analysis s<strong>of</strong>tware (Amersham<br />

Pharmacia Biotech)<br />

..............................................................................<br />

47<br />

Figure 2.4a Image showing how the DNA bands in one lane are established by<br />

measuring pixel intensity .....................................................................<br />

47<br />

Figure 2.4b Image showing how individual bands can be seen more clearly by removing<br />

the background pixel intensity using a rolling disc algorithm with a disc radius <strong>of</strong> 20 ... 47<br />

Figure 2.5a Image showing automatic band detection s<strong>of</strong>tware prior to artefact<br />

Removal<br />

.......................................................................................<br />

48<br />

Figure 2.5b Image showing bands detected after deletion <strong>of</strong> artefactual bands ...... 48<br />

Figure 2.6a Image showing standardisation across the gel suing retardation factor, which<br />

alleviated any distortion due to uneven running <strong>of</strong> warping <strong>of</strong> the gel ...............<br />

48<br />

Figure 2.6b Image showing molecular weights assigned to each <strong>of</strong> the detectable bands<br />

within the three 100 bp ladders, from which a curve is computed to allows cross gel<br />

comparison<br />

.......................................................................................<br />

49<br />

Figure 2.7. Image showing band matching s<strong>of</strong>tware (1 D elite gel analysis s<strong>of</strong>tware<br />

(Amersham Pharmacia Biotech)<br />

............................................................<br />

49<br />

i

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