[2] Mohebali, G. & A. S. Ball (2008): Biocatalytic Desulfurization (BDS) of petrodiesel fuels.Microbiol. 154, 2169-2183.[3] Oldfield, C. et al (1997): Elucidation of the metabolic pathway for dibenzothiophenedesulfarization by Rhodococcus sp. Strain IGTS8 (ATCC 53968). Microbiol. 143, 2961-2973.GWP024Identification and characterization of a 1,3-propanedioloxidoreductase from Pectobacterium atrosepticumS. Elleuche*, B. Klippel, G. AntranikianUniversity of Technology, Hamburg, GermanyThe compound 1,3-propanediole (1,3-PD) is a valuable chemical forpolyester production used in textile fiber, film and plastic industry. It isroutinely converted from acrolein or ethylene oxide via 3-hydroxypropionaldehyde (3-HPA) using chemical approaches. Since thechemical synthesis of 1,3-PD produces toxic intermediates and is highlyexpensive, much effort has been spent on its microbiological production. Innature, anaerobic microbial metabolism of glycerol involves a reductivepathway, enabling the NADH-dependent formation of 1,3-PD and a coupledoxidative pathway, which generates the reducing power for the reductivebranch. In a first reaction step, the conversion of glycerol to 3-HPA iscatalyzed by the enzyme glyceroldehydratase. Finally, 1,3-propanedioloxidoreductase (PDOR) reduces 3-HPA to 1,3-PD.To identify biocatalysts with novel properties for the production of 1,3-PD,we performed BLAST searches using the sequences of PDOR from bacteriaof the genera Citrobacter, Clostridium and Klebsiella, which are known toconvert glycerol to 1,3-PD. In addition, the sequence of the gene yqhD fromEscherichia coli was used as query. This open reading frame encodes aNADPH-dependent aldehyde reductase capable of catalyzing the formationof 1,3-PD from 3-HPA. Homologues of PDOR and YqhD were identified inthe genome of the facultative anaerobic bacterium Pectobacteriumatrosepticum. Both genes were cloned into pQE30 and pQE80 expressionvectors and were purified after heterologous production in E. coli. Resultson the characterization of the enzyme, including physicochemical andkinetic properties, will be presented.GWP025Expression of metagenomic membrane-bounddehydrogenases from acetic acid bacteria: The design ofnew oxidative catalysts.B. Peters*, D. Kostner, M. Mientus, A. Junker, W. Liebl, A. EhrenreichDepartment for Micriobiology, Technical University Munich, Freising,GermanyAcetic acid bacteria are used in biotechnology due to their ability toincompletely oxidize a great variety of carbohydrates, alcohols and relatedcompounds in a regio- and stereo-selective manner. Most of these reactionsare catalyzed by membrane-bound dehydrogenases with a broad substraterange.Acetic acid bacteria contain a multitude of such dehydrogenases and manyof them cannot be grown as pure cultures. Therefore we expect habitats richin acetic acid bacteria, such as a mother of vinegar to be good sources ofuncharacterized metagenomic dehydrogenases of potential value forbiotechnology. We investigated the diversity of several mothers of vinegarby 16S rDNA sequencing as a preparation to construct metagenomiclibraries.The metagenomic membrane bound dehydrogenases will be screened bysequence similarity and functionally expressed in tailor made Gluconobacteroxydans strains devoid of their own dehydrogenases to avoid overlappingspecificities. Expression in an acetic acid bacterium should facilitatefunctional integration in the membrane physiology of these organisms.To achieve this goal we developed a clean deletion system forGluconobacter strains based on 5' fluorouracil counter selection. Thissystem was used to delete various genes. Furthermore we developed theshuttle vector (E. coli-G. oxydans) system pKOS4 that is needed for theexpression of metagenomic dehydrogenases controlled by naturalconstitutive and inducible promoters of such enzymes.As currently very little is known about the promoters of membrane-bounddehydrogenases we investigated the regulation and transcription start pointof different dehydrogenases in G. oxydans 621H.GWP026Modification of the fatty acid composition of the bacterialmembrane of Rhodobacter capsulatusN. Katzke*, V. Svensson, K.-E. Jaeger, T. DrepperInstitute of Enzyme Biotechnology Heinrich-Heine-University, Jülich,GermanyUnsaturated or functionalized fatty acids are used for a multitude ofbiotechnological applications. As these compounds can only be found intrace amounts in their natural source and chemical synthesis is notefficiently feasible, they are usually produced via biocatalytic processes. Toproduce fatty acids with potentially high biological activity, fatty acidmodifyingenzymes are widely used for their functionalization. However,enzymatic functionalization of fatty acids is mostly limited by theavailability of substrates as many fatty acid modifying enzymes onlyspecifically convert defined acyl chains of membrane phospholipids.Recently we developed a novel expression system which is based on thephotosynthetic bacterium R. capsulatus [1-3]. In contrast to standardexpression hosts, R. capsulatus is particularly suited for the heterologousexpression of membrane proteins because it forms an extensive system ofintracytoplasmic membranes (ICM) during phototrophic growth. Since ICMformation basically allows accommodation of heterologous membraneproteins as well as efficient storage of phospholipids, we now tested if thefatty acid composition of the bacterial membrane can be modified in order tobiotechnologically produce functionalized fatty acids in high amounts. Herewe demonstrate that fatty acids of different chain length and degree ofunsaturation that have been supplemented to the growth medium wereefficiently integrated into the R. capsulatus membrane. Furthermore, theincorporation efficiency of foreign fatty acid could be significantly increasedby specific inhibition of the biosynthesis of endogenous unsaturated fattyacids.[1] Drepper, T. et al (2008): Verfahren und Vektor zur heterologen Genexpression, Patent applicationDE 10 2013 2304.2003, 2008.[2] Katzke N, Arvani S, Bergmann R, Circolone F, Markert A, Svensson V, Jaeger KE, Heck A,Drepper T: A novel T7 RNA polymerase dependent expression system for high-level proteinproduction in the phototrophic bacterium Rhodobacter capsulatus. Protein Expr Purif. 2010;69(2):137[3] Katzke, N.et al (2010): High-level gene expression in the photosynthetic bacterium Rhodobactercapsulatus. Methods Mol Biol.; in press.GWP027A pathway transfer system that facilitates theheterologous expression of large gene clusters in a broadrange of bacterial hostsA. Loeschcke* 1 , A. Markert 2 , K.-E. Jaeger 1 , T. Drepper 11 Institute for Molecular Enzyme Technology (IMET), Heinrich-Heine-University, Research Center Jülich, Jülich, Germany2 Radiology Department, University Hospital, Heidelberg, GermanyTo access valuable natural substances synthesized by microorganisms it isnecessary to establish complex biosynthetic pathways in heterologousbacterial hosts. However, several limitations associated with cloning,transfer, stable maintenance and functional expression of all pathway genesretain this process challenging. In order to overcome these limitations wedeveloped a novel biosynthetic pathway transfer and expression system,which facilitates the expression of unmodified large gene clusters indifferent heterologous hosts.The novel in vivo auto cloning and expression system (IVAC) consists oftwo different cassettes, named L- and R-IVAC. The two cassettes comprisestructural elements allowing (i) the conjugational transfer of large DNAfragments encompassing all genes of interest into the expression host, (ii)the integration of the IVAC-labelled gene cluster into the host chromosomevia transposition, and (iii) the expression of all target genes irrespective oftheir orientation and natural DNA elements that might affect theircoordinated expression in the respective host strain.Using a carotenoid biosynthetic gene cluster we could demonstrate that theIVAC-system is a powerful tool that allows the concerted functionalexpression of clustered genes in different bacterial hosts.spektrum | Tagungsband <strong>2011</strong>
GWP028Application of the soluble NAD + -reducing hydrogenase(SH) of Ralstonia eutropha H16 for solar-driven H 2 -production in cyanobacteriaK. Karstens*, B. Friedrich, O. LenzInstitute for Biology/Microbiology, Humboldt-University, Berlin, GermanyHydrogenases catalyze the reversible formation of 2e - and 2H + from H 2 [1].Hydrogen is discussed as a promising renewable fuel replacing fossil energycarriers in the future. Therefore, the H 2-production capability of theseenzymes is of significance for biotechnological applications.Theoretically cyanobacteria are ideally suited to produce H 2 from sunlightand water since they generate „high-potential” electrons duringphotosynthesis, which could be used directly by hydrogenases for hydrogenproduction.Indeed many cyanobacteria such as Synechocystis sp. PCC 6803 andSynechococcus PCC 7002, possess so called bidirectional [NiFe]-hydrogenases of the H 2:NAD(P) + -oxidoreductase type. In nature, theseenzymes evolve relatively small amounts of H 2 from accumulating reductantin form of NADH and NADPH under O 2-limiting conditions [2].In order to increase the amount of H 2 and to enable continuous production ofH 2 also in the presence of O 2, we are currently investigating the heterologoussynthesis of the soluble NAD + -reducing hydrogenase (SH) of the soilbacterium Ralstonia eutropha H16 in cyanobacteria. This bidirectional[NiFe]-hydrogenase is known to maintain H 2-conversion at highconcentrations of O 2 and has already been characterized intensively byvarious biochemical and spectroscopic methods [3,4].Conditions for heterologous production of functional R. eutropha SH inSynechocystis PCC 6803 are currently being explored. Very recently, SHproduction in the cyanobacterium Synechococcus PCC 7002 has beendemonstrated with a new heterologous expression strategy [5,6] and issubject of comprehensive characterisation and further optimisation in ourgroup.Furthermore, we aim to uncover the molecular basis for the exceptional O 2-tolerance of the R. eutropha SH. Ongoing analysis focuses on the aminoacid coordination of the Fe-S-cluster in the small e - -transferring hydrogenasesubunit of the SH. The mechanism of O 2-tolerance provides essentialknowledge to convert an O 2-sensitive cyanobacterial hydrogenase into anenzyme that produces H 2 directly from sunlight and water in the presence ofoxygen.[1] Vignais, P.M. and A. Colbeau (2004): Curr Issues Mol Biol, 6: 159-88.[2] Appel, J. et al (2000): Arch Microbiol, 173: 333-338.[3] Burgdorf, T. et al (2005): J Bacteriol, 187: 3122-32.[4] Horch, M. et al (2010): Angew Chem Int Ed Engl, 49: 8026-9.[5] Xu, Y. et al (<strong>2011</strong>): Methods Mol Biol, 684: 273-93.[6] Xu, Y. and D. Bryant (2010) personal communication.GWP029Engineered salt-induced ectoine promoter for use in H.elongata as halophilic expression systemE. Witt*, A. Grün, M. Kurz, E.A. GalinskiInstitute for Microbiology und Biotechnology, Friedrich-WestphalianWilhelms-University, Bonn, GermanyHeterologous protein expression is commonly carried out in E. coli, butoften limited by formation of inclusion bodies or unsatisfactory proteinstability. Heterologous expression systems in the presence of salt andcompatible solutes have previously been applied to demonstrate the potentialof including stabilizing/protecting solutes in the process of functionalrecombinant protein expression [1]. As E. coli´s capacity to tolerate saltstressis limited, Halomonas elongata, a moderate halophilic gammaproteobacterium of broad salt tolerance, has been proposed as an alternative[2].Halomonas elongata can grow over a salinity range of 1-20% NaCl and isable to adjust osmotic pressure by the intracellular accumulation of theprotein-protecting osmolytes ectoine and S,S-beta hydroxyectoine. Thebiosynthesis of these solutes is under the control of a salt-inducible promoterregion, promA. We present here the construction of a pBBR1-derived vectorcontaining an engineered version of the promA promoter. By modifying theribosomal binding site, we obtained a suitable vector (pWUB1) for salinitycontrolledprotein expression in H. elongata.Using GFP UV as a reporter gene, we monitored the expression patterncontrolled by the modified promoter region and also investigated theinfluence of osmotic stress and the presence of compatible solutes for finetuningof promoter regulation.[1] Barth, S. et al (2000): Compatible solute-supported periplasmic expression of functionalrecombinant proteins under stress conditions. Appl Environ Microbiol 66: 1572-1579.[2] Kurz, M. et al (2004): Heterologous protein expression in Halomonas elongata - why halophilicorganisms offer a viable alternative to E. coli. <strong>VAAM</strong>-<strong>Jahrestagung</strong> 2004; KD004.GWP030Synthesis of citrulline-rich cyanophycin by use ofPseudomonas putida ATCC 4359L. Wiefel*, A. Bröker, A. SteinbüchelInstitute for Molecular Microbiology and Biotechnology (IMMB),Westphalian Wilhelms-University, Münster, GermanyThe provision of cyanophycin (multi-l-arginyl-poly-l-aspartic acid, CGP) asa putative precursor for biodegradable technically employed chemicalsmakes it important to synthesise CGP in recombinant organisms.Furthermore derivates of CGP, harbouring other constituents, are of specialinterests for further research. As shown previously, cyanophycin synthetaseswith wide substrate ranges are able to incorporate other amino acids thanarginine like citrulline and ornithine, but are still dependent on additionalsupplementation of these amino acids in order to achieve sufficientincorporation rates [2]. Therefore, using an organism which produces theneeded supplement by itself, was the next logical step. Pseudomonas putidastrain ATCC 4359 is such an organism because it was previously shown thatit produces large amounts of L-citrulline from L-arginine [1]. Synthesis ofCGP in this P. putida strain was achieved by expressing the cyanophycinsynthetase of Synechocystis sp. PCC 6308. Using an optimised media forcultivation, the strain was able to synthesise insoluble CGP amounting up to14.7 ± 0.7 % (w/w) and soluble CGP amounting up to 28.7 ± 0.8 % (w/w) ofthe cell dry matter, leading to an overall CGP-content of 43.5 %. Theoccurrence of soluble CGP was dependent on the temperature duringcultivation. HPLC-analysis of the soluble CGP showed that it was composedof 50.4 ± 1.3 mol % aspartic acid, 32.7 ± 2.8 mol % arginine, 8.7 ± 1.6 mol% citrulline and 8.3 ± 0.4 mol % lysine, while the insoluble CGP containedamounts of less than 1 mol % of citrulline. Using mineral salt media with1.25 or 2 % (w/v) Na-succinate, respectively, and 23.7 mM L-arginine, thisstrain synthesised amounts of 25 to 29 % of the CDM insoluble CGPshowing only a very low citrulline content of less than 1 mol %.[1] Kakimoto, T. et al (1971): Enzymatic production of l-citrulline by Pseudomonas putida. ApplMicrobiol 22:992-999.[2] Steinle, A. et al (2009): Metabolic engineering of Saccharomyces cerevisiae for production ofnovel cyanophycins with an extended range of constituent amino acids. Appl Environ Microbiol75:3437-3446.GWP031Functional genomics of the prophage CGP3 causingpopulation heterogeneity in Corynebacterium glutamicumA. Heyer*, M. Bott, J. FrunzkeInstitute of Biotechnology, Research Center Jülich, Jülich, GermanyThe Gram-positive soil bacterium Corynebacterium glutamicumATCC13032 is one of the most important organisms in WhiteBiotechnology as it is used for the industrial production of more than twomillions tons of amino acids per year. Genome sequencing of C. glutamicumrevealed the existence of three prophages (CGP1, CGP2 and CGP3) highlydiverse in size and grade of degeneration. The largest prophage CGP3 (187kbp) accounts for 6% of the genome and is inserted in a cluster of tRNAgenes.Recent studies demonstrated via a fluorescence microscopy approach thatthe CGP3 prophage exhibits spontaneous induction in a small fraction of C.glutamicum wild type cells. Upon induction CGP3 excises from the genomeand exists as a circular double-stranded DNA molecule (Frunzke et al.,2008). In several cases, phage induction was accompanied by lysis of thecells suggesting the expression of functional phage lysins. Therefore, studieswere initiated in order to understand spontaneous CGP3 induction leading topopulation heterogeneity and cell lysis in C. glutamicum cultures.A first series of experiments focused on the identification of the putativephage regulator controlling the lysogenic/lytic switch of CGP3. A potentialcandidate is the putative transcriptional regulator Cg2040 encoded by theCGP3 genome. Transcriptome comparisons of a strain overexpressingCg2040 and C. glutamicum wild type resulted in significantly reducedmRNA levels of five phage genes, which are located next to or in closevicinity of cg2040. Subsequently, binding of purified Cg2040 to putativetarget promoters was verified via electrophoretic mobility shift assay(EMSA). Furthermore, first results will be provided concerning thefunctionality of the putative phage integrase Int2 of CGP3. These effortsspektrum | Tagungsband <strong>2011</strong>
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14 GENERAL INFORMATIONEinladung zur
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16 AUS DEN FACHGRUPPEN DER VAAMFach
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18 AUS DEN FACHGRUPPEN DER VAAMFach
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22 INSTITUTSPORTRAITMicrobiology in
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ISV01The final meters to the tapH.-
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ISV11No abstract submitted!ISV12Mon
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ISV22Applying ecological principles
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ISV31Fatty acid synthesis in fungal
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AMV008Structure and function of the
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pathway determination in digesters
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nearly the same growth rate as the
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[1] Kennelly, P. J. (2003): Biochem
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[3] Yuzenkova. Y. and N. Zenkin (20
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(TPM-1), a subunit of the Arp2/3 co
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in all directions, generating a sha
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localization of cell end markers [1
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possibility that the transcription
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Bacillus subtilis. BiFC experiments
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published software package ARCIMBOL
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EMV005Anaerobic oxidation of methan
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esistance exists as a continuum bet
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ease of use for each method are dis
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ecycles organic compounds might be
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EMP009Isotope fractionation of nitr
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fluxes via plant into rhizosphere a
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EMP025Fungi on Abies grandis woodM.
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nutraceutical, and sterile manufact
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EMP049Identification and characteri
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EMP058Functional diversity of micro
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EMP066Nutritional physiology of Sar
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acids, indicating that pyruvate is
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[2] Garcillan-Barcia, M. P. et al (
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OTP022c-type cytochromes from Geoba
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To characterize the gene involved i
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OTP037Identification of an acidic l
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PSP006Investigation of PEP-PTS homo
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RGP035Kinase-Phosphatase Switch of
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RGP043Influence of Temperature on e
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[3] was investigated. The specific
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transcriptionally induced in respon
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during development of the symbiotic
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cations. Besides the catalase depen
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SRP016Effect of the sRNA repeat RSs
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264 AUTORENBreinig, F.FBP010FBP023B
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266 AUTORENGoerke, C.Goesmann, A.Go
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268 AUTORENKlaus, T.Klebanoff, S. J
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270 AUTORENMüller, Al.Müller, Ane
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272 AUTORENScherlach, K.Scheunemann
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274 AUTORENWagner, J.Wagner, N.Wahl
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276 PERSONALIA AUS DER MIKROBIOLOGI
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278 PROMOTIONEN 2010Lars Schreiber:
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280 PROMOTIONEN 2010Universität Je
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282 PROMOTIONEN 2010Universität Ro
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Die EINE, auf dieSie gewartet haben