ecycles organic compounds might be of special relevance to this severelynutrient-depleted habitat.[1] Engelhardt, T. et al (<strong>2011</strong>): Induction of prophages from deep-subseafloor bacteria. EMIR (inpress).EMP001Biodegredation of 2 – Methooxyethanol by a newbacterium isolate Pseudomonas sp. Strain VB underaerobic conditionsO.F. EkhaiseDepartment of Microbiology, University of Benin, Benin, NigeriaMicrobial biodegradation of 2-methoxyethanol also known as Methyl glycol(MG) under anaerobic conditions has received much attention during thepast decade. However, not much is known about the aerobic degradation of2-methoxyethanol. Samples from various environmental niches wereenriched to isolate and determine bacterial isolates capable of utilizing 2-methoxyethanol as a sole source of carbon and energy under aerobicconditions. A 2-methoxyethanol degrading bacterium was isolated fromanaerobic sludge of a municipal sewage from a treatment plant in Bayreuth,Germany, by selective enrichment techniques. The isolate was designatedstrain VB after it was shown by the 16S rRNA phylogenetic sequenceanalysis as belonging to the genus Pseudomonas. Under aerobic conditionsPseudomonas sp. strain VB was capable of mineralizing 2-methoxyethanoland its intermediary metabolites. Stoichiometrically, the strain utilized onemole of oxygen per one mole of 2-methoxyethanol instead of four moleoxygen per one mole of 2-methoxythanol for the total oxidative metabolism.[1] Daniel, L. et al (1994): Chemical analysis In Gerhardt, P; Murray, E G R; Wood, A W; Krig R N(eds)), Methods for General and Molecular Bacteriology ASM. Press Washingtion, D.C p971.[2] Diekert, G. (1992): The Acetogenic Bacteria. In Balows A. Truper, G.H., Dworkin, M., Harder,W. and Schleifer, K-H (eds). The Prokaryotes. Vol. 1. Springer - Verlag, Erlin. P971.[3] Ekhaise, F. O. (2002): Biodergradation of 2-merhoxyyethanol - isolation, characterizationdegrading bacterium under aerobic conditions. Ph.D. Thesis University of Benin, Benin City, Nigeria.p158.[4] Gerhardt, P. et al (1994): Methods for Genral and Molecular Bacteriology. ASM press, WashintonD.C. p971.[5] Madigan, T. M. et al (2000): Biology of Microorganisms 9 th ed. Prentice Hall, New Jersey, p986.[6] Meyer, O. and G.H. Schelgel (1983): Biology of aerobic carbon monoxide-oxidizing bacteria.Ann. Rev. Microbiol 37:277-310.[7] Pottrawtke, T. et al (1998): Degradation of 1,2,3,4 - Tetrachlorobenzene by Pseudomonaschlorophis RW71. Appl. Envion. Microbiol. 64: 3798-3806.[8] Rainey, F. A. et al (1996): The genus Nocardiopsis represents a phylogenetically coherent taxonand a distinct actinomycete lineage: Proposal of Nocardiopsceas fam. Nov. Int. J. Syst. Bacteriol. 46:1088-1092.[9] Tanaka, K. (1986): Methane fermentation by mesophilic digesting sludge. J. Ferment. Technol.64:305 – 30.[10] Tanaka, K. and N. Pfenning (1988): Fermentation of 2-methoxyethanol by Acetobaceriummalicum sp. Nov and Pleobacter venetianus. Arch. Microbiol 149: 181 - 187.EMP002The Molybdenum Storage Protein - a special kind ofmetalloproteinJ. Poppe* 1 , B. Kowalewski 2 , K. Schneider 2 , U. Ermler 11 Deparmtnet of Molecular Membrane Biology, Max Planck Institute ofBiophysics, Frankfurt, Germany2 Faculty of Chemistry, University of Bielefeld, Bielefeld, GermanyThe diazotrophic soil bacterium Azotobacter vinelandii utilizes a FeMocofactorcontaining nitrogenase in larger amounts to accomplish nitrogenfixation. This requires a lot of molybdenum, which is extracted from theenvironment and stored in a special Molybdenum Storage Protein (MoSto).This extraction strategy is rather efficient and limits the available Mocontents for other soil bacteria.The MoSto is a remarkable protein due to its capability to store hugeamounts of Mo in form of polyoxomolybdate clusters [2]. X-ray studies ofthe loaded MoSto after purification revealed different types of Mo-oxidebased clusters some being covalently bound while others are not. Synthesisof these clusters is an ATP-dependent process whose mechanism is not yetknown. In-vitro experiments showed that it is possible to fully deplete theMoSto of its metal clusters and later on reload it again. The depletion provedto be a pH-driven triphasic process which can be varied with temperatureand time of incubation [1]. Depending on the method of protein purificationthis can lead to a total reload of 120 Mo-atoms per protein molecule. Furtherresearch is necessary to determine the way the clusters are built from singleMo-ions and how their release from MoSto is organized.[1] J. Schemberg et al (2008): ChemBioChem, 9, 595-602.[2] D. Fenske et al (2005): ChemBioChem, 6, 405-413.EMP003Impact of extreme weather events on the microbialfunction of soilV. Hammerl* 1 , K. Pritsch 2 , A. Jentsch 3 , C. Beierkuhnlein 4 , M. Schloter 1,21 Department of Soil Ecology, Technical University Munich, Neuherberg,Germany2 Department of Soil Ecology, Helmholtz Center for EnvironmentalResearch (UFZ), Munich, Germany3 Department of Geoecology and Physical Geopgraphy, University ofLandau, Landau, Germany4 Department of Biogeography, University of Bayreuth, Bayreuth, GermanyProlonged drought periods as predicted in future climate scenarios willaffect ecosystem functions in multiple ways. Water stress not only affectsplants but also soil microorganisms. As important soil functions, nutrientturnover processes will be affected during the vegetation period when plantshave highest demands. Drought is one of the factors addressed in theEVENT-Experiment established at the Botanical Garden of the University ofBayreuth. In this project, we hypothesise that hydrolytic enzyme activitieswill be reduced and oxidative processes will be favoured under droughtconditions. Therefore, biochemical parameters such as soil enzymaticactivities of hydrolytic (phosphatase, chitinase, proteases, cellulases) andoxidative enzymes (phenoloxidases, peroxidases) are measured. In additionthe gene and transcript pool of these enzymes will be studied usingmolecular biological studies on nucleic acids extracted from soil (chitinase,cellulases, xylosidase). The project focuses on experimental and naturalgrassland communities. First results will be presented on drought effects(1000 year extremes) and an outline of the overall design of the study ispresented.EMP004Low-temperature denitrification in wastewater by usingof encapsulated biomass: The choice of appropriateorganismL. Vacková* 1 , M. Srb 1 , R. Stloukal 2 , J. Wanner 11 Institute of Chemical Technology Prague, Department of WaterTechnology and Environmental Engineering, Praha, Czech Republic2 LentiKat's a.s., Praha 6, Czech RepublicWastewater treatment is one of the fields of industrial application ofmicrobial processes. Recently, the biological treatment is provided by socalledactivated sludge, the dynamic polyculture containing huge number ofbacterial species.This technology can be modified, for example by using encapsulatedbiomass. This kind of immobilisation technique encases the microorganismsinto porous polymerous gel, in the case of our study into polyvinylalcohol.The structure of gel enables diffusion of substrate to organisms as well asthe microbial growth, but prevents the bacteria from outside of the pelletfrom intrusion to the inside. As the pellet contains only bacterial speciesintroduced during the fabrication process, careful selection of suitableculture to be immobilized is necessary.The denitrification process in wastewater as well as in drinking watertreatment can be slowed down by low temperature of water. In this study,three types of immobilized denitrification cultures have been compared. Thefirst type contained pure culture of Paracoccus denitrificans with optimaltemperature of 30 - 37 °C [1], which has already been used for fullscaledenitrification [2]. The second type contained pure culture of Pseudomonasfluorescens as a representative of psychrophilic bacteria. The last typecomprised of highly-adapted mixed culture of psychrophilic denitrifierscultivated for one year at 5 °C from activated sludge.The aim of this work was to compare denitrification activity of these typesof encapsulated biomass. The experiments were held with syntheticwastewater containing 50 mg·L -1 N-NO 3 - under the temperature 15, 10, 8and 5 °C. Specific denitrification rates were calculated and the temperaturecoefficients describing the dependence of denitrification rate on thetemperature were determined. The culture composition and dislocationwithin the pellets was observed. Since the low-temperature denitrification issupposed to be performed in industrial-scale, it is necessary to consider notonly the denitrification rates and courses, but also the possibility of easy,steady and sustainable cultivation when choosing appropriate organism.[1] Garrity, G.M. et al (2005): Bergey's Manual of Systematic Bacteriology, Volume Two: TheProteobacteria, Parts A - C, Springer - Verlag, pp. 323-369.[2] Mrákota, J.et al (2010): Dočištění dusičnanového dusíku pomocí biotechnologie lentikats naodtoku z reálných ČOV. in: Odpadové vody 2010, (Eds.) I. Bodík, M. Hutňan, Vydavatel'stvo VÚP -OI. Štrbské Pleso, pp. 145-150.spektrum | Tagungsband <strong>2011</strong>
EMP005Identification of indigenous bacteria in an As-highaquifer of Hetao Basin, ChinaX. Tang* 1 , T. Schwartz 2 , H. Guo 3 , S. Norra 1,41 Institute for Minerology and Geochemistry (IMG), <strong>Karlsruhe</strong> Institute ofTechnology, <strong>Karlsruhe</strong>, Germany2 Institute of Functional Interfaces, <strong>Karlsruhe</strong> Institute of Technology,Eggenstein-Leopoldshafen, Germany3 School of Water Resources & Environment, China University ofGeosciences, Beijing, China4 Institute of Geography and Geoecology, <strong>Karlsruhe</strong> Institute of Technology(KIT), <strong>Karlsruhe</strong>, GermanyEndemic arsenicosis poses a huge threat to habitant’s health in the areas withhigh arsenic concentration of Hetao Basin, China, where As concentrationsrange between 1 and 1000 μg/L. Here, a significant proportion (up to 90%)of the As occurs as As (III). From a geological, geochemical andmicrobiological viewpoint, there are many studies trying to find the sourcesof high arsenic concentration in groundwater. Recently, it is generallyaccepted that microbial activities play a critical role in the releasing ofarsenic from the sediments.Four drillings were carried out in aquifers with different As concentrationlevels in Hetao Basin. Polymerase chain reaction (PCR) and denaturinggradient gel electrophoresis (DGGE) were used to identify relevant bacteriaspecies responsible for As release in different sediments of those drillings.The sediments with indigenous bacteria were cultured with DEV-agar plates.For this experiment, 300 μg/L As (V) were added and the growingconditions were comparable to the aquifer conditions on-site.The PCR-DGGE profiles indicated that the bacteria species, which can growwell with high-As concentration under lab conditions, were very differentfrom the indigenous bacteria that were found in the raw sediments.Comparative sequence analyse for the raw sediment revealed various DNAband patterns, suggesting a population shift in different depths and differentsediments. Some bacteria, which may affect the release and mobilization ofAs in aquifer, like iron-reducing bacterium, Siderooxidans paludicola andNovosphingobium hassiacum were found in the sediments. There are manyarsenic resistant bacteria, which have isolated from the incubations. Forexample Pseudomonas sp., which is gram-negative, rod-shaped, non-motile,non-spore-forming, and noncapsulated, is a very efficient As (V) reducingbacterium. The DGGE profiles also indicated that most of indigenousbacteria species had high G+C, but most of bacteria that were incubated inlab had low G+C.EMP006Bacteria associated with coexisting macroalgae: seasonal,interspecies variation and antibiotic effectsF. Goecke Saavedra*, A. Labes, J. Wiese, J.F. ImhoffKieler Wirkstoffzentrum at the Leibniz Institute of Marine Sciences IFM-GEOMAR, FB3 - Marine Mikrobiologie, Kiel, GermanyBacteria associated with 2 macroalgae, a brown and a red macroalga,coexisting in the Kiel Fjord (Baltic Sea, Germany) were investigatedseasonally by scanning electron microscopy and cultivation methods.Significant differences between both macroalgal species with regard to theirassociated bacteria and seasonal variations were observed.166 bacterial strains were isolated from both macroalgae and classified byphylogenetic analysis of 16S rRNA gene sequences. The strains belonged to82 phylotypes according to sequence similarities of >99.0%. They affiliatedto Actinobacteria, Alphaproteobacteria, Bacilli, Betaproteobacteria,Flavobacteria, Gammaproteobacteria, and Sphingobacteria. Samples fromFucus vesiculosus revealed 43, and samples from Delesseria sanguinea 57phylotypes. Certain phylotypes are consistently found as epiphytes,suggesting their specific association to macroalgae.Culture extracts of all bacteria were tested for antimicrobial activity. Morethan 60% of the phylotypes inhibited the growth of at least onemicroorganism of a standard and an ecologically relevant test panel (Grampositiveand Gram-negative bacteria, including macroalgal pathogens andsurface associated strains, and one yeast). A higher proportion of the strainsshowed antimicrobial activity against the ecologically relevant bacteria ascompared to the standard set of microorganisms. In contrast, extracts of themacroalgae presented only a weak inhibition of test panel microbes, but ageneral growth stimulating effect on the macroalgae-associated strains.Significant activity of the associated bacteria against macroalgal pathogensand competitors and the stimulating effect of the algal host extracts indicatespecific functions and adaptations of these bacteria to algal host and viceversa.EMP007Biogeochemical mobilization of arsenic from aquifersediments in West Bengal, IndiaH. Neidhardt* 1 , D. Freikowski 2 , Z. Berner 1 , A. Biswas 3 , S. Norra 1 ,J. Winter 2 , D. Chatterjee 31 Institute of Mineralogy and Geochemistry, <strong>Karlsruhe</strong> Institute ofTechnology (KIT), <strong>Karlsruhe</strong>, Germany2 Institute for Biology for Engineers and Biotechnology of Waste WaterTreatment, <strong>Karlsruhe</strong> Institute of Technology (KIT), <strong>Karlsruhe</strong>, Germany3 Department of Chemistry, University of Kalyani, Kalyani, IndiaThe aim of this field experiment was to test the potential role ofmicroorganisms in the occurrence of As-rich groundwater, by stimulatingthe activity of indigenous microbial populations within a shallow aquifer, inWest Bengal, India. Local groundwater is of Ca-HCO 3 - -type andhydrochemical parameters indicate low redox conditions, in the range ofiron reduction.Sucrose was inserted as readily degradable organic carbon source into fivenested monitoring wells by circular pumping, thus generating concentrationsfrom 8.3 to 873 mg/L within the screened depth intervals from 12 - 44 m.For the following 14 days, field parameters were measured and watersamples were taken every second day to examine the geomicrobiologicaleffects involved in the mobilization of As. Significant changes inhydrochemical parameters have been observed soon after insertion,indicating that the microbial stimulation was successful. Sucroseconcentrations decreased continuously, while degradation products likeacetate were formed, disturbing the hydrogeochemical equilibrium in thewater-sediment-system. Formation of organic acids (like acetate anions) ledto a partial dissolution of carbonates. The absence of dissolved oxygen,nitrate and sulphate combined with a strong increase in the concentration ofdissolved Fe II (up to 36 times relative to its initial value) indicates ongoingdissimilatory Fe-reduction, which is believed by many authors to beresponsible for As mobilization (e.g. [1]). Dissolved As concentrationsshowed a considerable temporary increase of up to 49% of the initial value.Nevertheless, this increase appeared to be relatively low as compared to themobilization of other trace elements, most likely also associated with Feoxyhydroxides.Our field experiments strongly support the assumption thatthe mobilization of As is primarily influenced by the biotransformation ofFe-mineral phases [2; 3]. The dissolution of some mineral phases (e.g. Feoxyhydroxides,carbonates, etc.), and the mobilization of associated traceelements, including As, is controlled to a large extent by microbialmetabolism, which ultimately depends on the availability organic electrondonors in the groundwater environment.[1] Islam, F. S. et al (2004): Role of metal-reducing bacteria in arsenic release from Bengal deltasediments. Nature, 430, 68-71.[2] Kocar, B.D. et al (2006): Contrasting Effects of Dissimilatory Iron(III) and Arsenic(V) Reductionon Arsenic Retention and Transport. Environ. Sci. Technol., 40, 6715-6721.[3] Tufano, K.J and S. Fendorf (2008): Confounding impacts of iron reduction on arsenic retention.Environ. Sci. Technol., 42, 4777-4783.EMP008Identification of nitrifying bacteria in activated sludgeH. Stryjová*, J. WannerInstitute of Chemical Technology Prague, Department of Water Technologyand Environmental Engineering, Prague, Czech RepublicNitrogen removal is an important process in wastewater treatment system.Nitrifying bacteria have slow growth rates and are sensitive to toxic shocks,pH- and temperature swings. This is the reason why many wastewatertreatment plants (WWTPs) fail to establish stable nitrification. The microbialecology of nitrifying bacteria from Czech WWTPs was investigated usingfluorescence in situ hybridization (FISH) with 16S rRNA-targetedoligonucleotide probes. This paper is focused on detection of single cells orvarious clusters of nitrifying bacteria in activated sludge samples taken fromsewage WWTPs. Bacteria were identifying and quantifying usingepifluorescence microscopy and image analysis.spektrum | Tagungsband <strong>2011</strong>
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12 GENERAL INFORMATION · SPONSORS
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14 GENERAL INFORMATIONEinladung zur
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18 AUS DEN FACHGRUPPEN DER VAAMFach
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22 INSTITUTSPORTRAITMicrobiology in
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FGP011Functional genome analysis of
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hyperthermophilic D-arabitol dehydr
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GWV012Autotrophic Production of Sta
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EPS matrix showed that it consists
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enzyme was purified via metal ion a
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function, activity, influence on gl
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groups. Multiple isolates were avai
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Dinoroseobacter shibae for our knoc
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MPV009Connecting cell cycle to path
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dependent polar flagellum. The torq
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(ciprofloxacin, gentamicin, sulfame
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and at least 99.5% of their respect
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a novel initiation mechanism operat
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[3] was investigated. The specific
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cations. Besides the catalase depen
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264 AUTORENBreinig, F.FBP010FBP023B
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266 AUTORENGoerke, C.Goesmann, A.Go
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268 AUTORENKlaus, T.Klebanoff, S. J
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270 AUTORENMüller, Al.Müller, Ane
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272 AUTORENScherlach, K.Scheunemann
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274 AUTORENWagner, J.Wagner, N.Wahl
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276 PERSONALIA AUS DER MIKROBIOLOGI
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278 PROMOTIONEN 2010Lars Schreiber:
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280 PROMOTIONEN 2010Universität Je
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282 PROMOTIONEN 2010Universität Ro
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Die EINE, auf dieSie gewartet haben