finally aim at the inactivation of CGP3 in C. glutamicum in order to obtainstrains with enhanced genomic stability and improved performance inindustrial production processes.[1] Frunzke, J. et al (2008): Population Heterogeneity in Corynebacterium glutamicum ATCC 13032Caused by Prophage CGP3. Journal of Bacteriology 190: 5111-5119.utilizable carbon sources in addition to DTDP as the sulfur harboring PTEprecursor.[1] Lütke-Eversloh, T. and A. Steinbüchel (2004): Macromol. Biosci. 4:165-174.[2] Wübbeler et al (2008): Appl. Environ. Microbiol. 74:4028-4035.[3] Wübbeler et al (2010): Appl. Environ. Microbiol. 76:7023-7028.[4] Liu, S. J. & Steinbüchel, A. (2000) Appl. Microbiol. Biotechnol. 66:739-743.GWP032Production of the lantibiotic mersacidin by Bacillusamyloliquefaciens FZB42J. Dischinger* 1 , A.-M. Herzner 1 , M. Josten 1 , A. Hoffmann 1 , H.-G. Sahl 1 ,J. Piel 2 , G. Bierbaum 11 Institute of Medical Microbiology, Immunology and Parasitology,University of Bonn, Bonn, Germany2 Kekulé Institute of Organic Chemistry and Biochemistry, University ofBonn, Bonn, GermanyMersacidin belongs to a group of ribosomally synthesized peptide antibioticscalled lantibiotics. Lantibiotics are characterized by the presence of theunusual amino acids lanthionine and methyllanthionine that are introducedvia extensive posttranslational modifications. Genes coding for theprepeptide and for proteins involved in modification, processing, transport,regulation and immunity are organized in gene clusters.Mersacidin (MW: 1824 Da) consists of 20 amino acids and is produced byBacillus spec. HIL Y-85,54728. Its antimicrobial activity is due to complexformation with the peptidoglycan precursor lipid II, thereby inhibiting cellwall biosynthesis. It exerts interesting antimicrobial activities against humanpathogens, including MRSA strains.Since the mersacidin producer strain is not easily transformable, the aim ofthis study was the production of mersacidin in the naturally competent B.amyloliquefaciens FZB42. A blast analysis in the NCBI database identifiedthe 5’part of the mrs gene cluster including the genes for immunity andregulation (mrsEFG; mrsKR2) within the genome sequence of this strain.These genes are located in the same region as in the wildtype producer. MICdeterminations showed that B. amyloliquefaciens FZB42 exhibits immunityto mersacidin at the same level as the wild type producer. The completion ofthe gene cluster was performed using genomic DNA of a wild type producermutant (B. spec. rec1) that is characterized by an exchange of the structuralgene (mrsA) for ermB and mrsA was reconstituted in trans. Production ofactive mersacidin was confirmed by agar well diffusion assays, HPLC andMALDI-TOF analysis. Genomic sequences obtained from the wild typeproducer showed a high identity (98.5%) to corresponding genes of B.amyloliquefaciens FZB42. Furthermore, metabolic profiling and 16sRNAsequencing also indicate that B. spec. HIL Y-85,54728 might be a memberof the species B. amyloliquefaciens.GWP033Biotechnical production of homopolythioester applying3,3´-dithiodipropionic acid as precursor substrate and arecombinant strain of Advenella mimigardefordensisY. Xia*, H. Wübbeler, A. SteinbüchelInstitute for Molecular Microbiology and Biotechnology (IMMB),Westphalian Wilhelms-University, Münster, GermanyIn the past, homopolymers of polythioester (homo-PTE) could only beproduced using recombinant strains of Escherichia coli and more or lessgrowth inhibitory 3-mercaptoalkanoates [1]. Nontoxic and more stable PTEprecursors would be valuable for high-scale biotechnical applications. Byadapting the knowledge unraveled for the 3,3´-dithiodipropionic acid(DTDP) catabolism and pathway in A. mimigardefordensis strain DPN7 T , analternative homo-PTE production strain was successfully constructed. Cellsof A. mimigardefordensis cleave DTDP symmetrically into two molecules of3-mercaptopropionic acid (3MP) [2, 3]. 3MP is the building block of thebasic homo-PTE poly(3MP). However, in A. mimigardefordensis wild typecells, a 3MP dioxygenase (Mdo) sulfoxygenates emerging 3MP into 3-sulfinopropionic acid, which is afterwards metabolized and used as a carbonsource for growth. Deletion of mdo and introduction of the artificial BPECpathway(genes encoding the butyrate kinase (Buk) and thephosphotransbutyrylase (Ptb) from Clostridium acetobutylicum as well asthe PHA synthase (PhaEC) from Thiococcus pfennigii [4]) resulted in thepotent poly(3MP) producing strain A. mimigardefordensis ∆mdobuk_ptb::recA pBBR1MCS5::phaEC. This strain synthesized poly(3MP)and accumulated it to more than 15% (wt/wt CDW) of poly(3MP), ifcultivated in mineral salts media containing propionate and/or glycerol asGWP034Microbial Production of Single Cell Oil (SCO) from Low-Cost Carbon Sources with the Yeast CryptococcuscurvatusI. Schulze*, I. Hein, A. Neumann, C. SyldatkInstitute of Process Engineering in Life Sciences, Section II: TechnicalBiology, <strong>Karlsruhe</strong> Institute of Technology (KIT), <strong>Karlsruhe</strong>, GermanyOleaginous microorganisms are species of yeasts, molds, bacteria andmicroalgae which contain more than 20 % lipids in their cellular dry weight,so called single cell oils (SCOs). These SCOs are produced intracellularly inthe stationary growth phase under nitrogen limitation with simultaneousexcess of a carbon source. The amount of such storage lipids can reach up to70 % of the cellular dry weight. Some oleaginous microorganisms areknown to produce high proportions of polyunsaturated fatty acids (PUFAs)which are important for the food and cosmetic industry. SCOs can beproduced from renewable resources without competition with food or feed.The aim of this study is the setup of a process for the economical productionof SCO with the model yeast strain Cryptococcus curvatus. For this purposedifferent low-cost carbon sources, including waste material containingcarbohydrates, e.g. raw glycerol from biodiesel production or lignocelluloseswaste material, are to be tested regarding to quantity and quality of theproduced SCO. Additionally, the influence of process parameters(temperature, pH value, aeration, C/N-ratio) and the influence of amount andmanner of nitrogen addition on the quality and quantity of the producedSCO should be examined.GWP035Conversion of „alpeorujo” by agaricomycetes and theiroxidoreductasesR. Reina 1 , C. Liers 2 , E. Aranda* 1 , M. Kluge 2 , R. Ullrich 2 , A. Karich 2 ,I. García-Romera 1 , M. Hofrichter 21 Soil Microbiology and Symbiotic Systems, Estación Experimental delZaidín (CSIC), Granada, Spain2 Unit of Environmental Biotechnology, International Graduate School ofZittau, Zittau, GermanyMediterranean countries generate high amounts of a solid by-product of theolive oil production, the so-called „alpeorujo” (approximately 800 kg t −1 ofprocessed olives). The water soluble fraction of alpeorujo containspolyphenols and monoaromatic hydrocarbons, which are structurallyheterogeneous and inhibit microorganisms and plant growth, such as themain monomeric phenols tyrosol and hydroxytyrosol. Proper handling anddetoxification practices are, therefore, required if „alpeorujo” is to berevalorized as a potential fertilizer or amendment. Research is needed tounderstand the transformation mechanisms of the residue and theimplications of its use for agricultural purposes.Wood and leaf-litter colonizing Basidiomycotina (mostly Agaricomycetes)are the most efficient degraders of persistent natural polymers. They secreteextracellular oxidoreductases like class II peroxidases (e.g. manganeseperoxidase - MnP, lignin peroxidase - LiP, versatile peroxidase - VP) andlaccases (Lac). These biocatalysts are thought to be the key enzymes oflignin degradation and due to their broad substrate spectrum and enzymaticstability they are of particular interest as potential catalysts forbioremediation purposes.In the present work we demonstrate the effects of in-vivo and in-vitroconversionof „alpeorujo” by wood-degrading fungi (e.g. Bjerkanderaadusta and Auricularia auricula-judae). Besides stimulating effects on theenzyme secretion (e.g. up to 55 U ml -1 MnP of B. adusta and 2000 U g -1MnP of A. auricula) by this agricultural waste material, we found asignificant decrease in total phenolic content (~90%) during liquid and solidfermentation of „alpeorujo”. These findings are correlated by a distinct shiftof water-soluble aromatics (detected at 260 nm) from low mass (3 kDa) tohigher molecular mass (30 kDa) fractions, measured by HPLC-SEC, whichimplicates a polymerization process. In-vitro-conversion of the phenol-rich„alpeorujo” with purified MnP and Lac resulted in a decrease of the totalspektrum | Tagungsband <strong>2011</strong>
phenol content (23% and 55% respectively) in combination with acharacteristic shift of the fragmentation pattern of water-soluble aromatics.Our results show that the phenol-rich biopolymer stimulates the secretion ofextracellular fungal biocatalysts (e.g. MnP), which finally leads to adecomposition effect of agricultural waste material suitable for agriculturalpurposes.GWP036Heterologous production of the non-proteinogenic aminoacid L-pipecolic acid in Corynebacterium glutamicumN. Wagner, N. Fischer*, A. Steinkämper, R. Biener, D. SchwartzApplied Sciences/Biotechnology, University of Applied Sciences, Esslingen,GermanyThe non-proteinogenic amino acid L-pipecolic acid is found as a buildingblock in the structure of many microbial secondary metabolites such as theimmunosuppressants rapamycin and FK506 or the antibiotics pristinamycinand friulimicin [1]. Due to its ability to introduce reverse turns in peptides,pipecolic acid increases the stability and potency of such compounds. Thenon-racemic production of the amino acid is catalyzed by lysinecyclodeaminases such as the Pip protein in the friulimicin biosynthesis (2).The pip gene of the friulimicin biosynthetic gene cluster was heterologouslyexpressed both in Escherichia coli and different strains of the industriallysine producer Corynebacterium glutamicum (wildtype, DlysE mutant,DM1730). The functionality of corresponding His- and MalE-taggedrecombinant enzymes was shown by the detection and quantification of L-pipecolic acid production by thin layer chromatography. The best result wasfound in C. glutamicum DM1730 carrying the MalE-tagged Pip protein. Dueto its positive characteristics, L-pipecolic acid represents a useful buildingunit for production of bioactive natural or synthetic peptides. According toour results, C. glutamicum DM1730 seems to be a suitable heterologous hostfor a prospective biotechnological production of this unusual amino acid.[1] Vertesy et al. (2000), J. Antibiot (Tokyo). 53, 816-827.[2] Müller et al. (2007), Antimicrob Agents Chemother. 51, 1028-1037.GWP037Enzymatic and chemical modification of biosurfactantsM. Gerlitzki* 1 , V. Recke 2 , M.M. Müller 1 , R. Hausmann 1 , C. Syldatk 1 ,S. Lang 21 Technical Biology, <strong>Karlsruhe</strong> Institute of Technology (KIT), <strong>Karlsruhe</strong>,Germany2 Institute for Biochemistry and Biotechnology, Department ofBiotechnology, University of Technology, Braunschweig, GermanyThere has been an increasing interest in biologically produced surfactantssuch as Sophorolipids and Rhamnolipids. Rhamnolipids are produced byPseudomonas aeruginosa when grown on glycerol, triglycerides or n-alkanes. Sophorolipids are produced by Candida bombicola in high yields[1]. These substances are able, e.g., to enhance the biodegradation ofhydrocarbons in soil [2].In this study we are interested in modifying microbial glycolipids in order toget additional interesting properties such as improved surface/ interfacialactivity or bioactivity.Starting with these biosurfactants we try to achieve the sophorose, dirhamnoseand mainly the uncommen fatty acids by hydrolysis. Herefore, wewant to use chemical hydrolysis to get the β-hydroxydecanoic (RL) acid and17-hydroxyoctadecenoic (SL). Enzymatic hydrolysis will be used for the 3-(3-hydroxydecanoyloxy) decanoic acid. These first products shall be used asbuilding blocks for the syntheses of new glycolipids using variousglycosidases and/or lipases to show if the special surface/interface activityand bioactivity is founded in the fatty acids or in the unusual sugars.The new glycolipids will be purified and afterwards characterizedconcerning their molecular structures (NMR, mass spectrometry, elementalanalysis). Additionally, we plan to determine their antimicrobial and otherbioactive properties, e.g. anti-tumor promoting activity (in cooperation withH. Tokuda, Kanazawa University, Japan).[1] Daniel, H-J. et al (1998): Production of sophorolipids in high concentration from deproteinizedwhey and rapeseed oil in a two stage fed-batch process using Candida bombicola ATCC 22214 andCryptococcus curvatus ATCC 20509. Biotechnol. Lett. 20: 1153-1156.[2] Kang, S-W. et al (2009): Enhanced biodegradation of hydrocarbons in soil by microbialbiosurfactant, sophorolipid. Appl. Microbiol. Biotechnol. DOI10.1007/s12010-009-8580-5.GWP038Three Novel Thermostable Lipases from DifferentMetagenomes Ranging from Soil Enrichments toHydrothermal VentsJ. Chow* 1 , C. Vollstedt 1 ,M.Perner 1 , O. Thum 2 , W. Streit 11 Microbiology and Biotechnology, University of Hamburg, Hamburg,Germany2 Evonik Goldschmidt GmbH, Biotechnology Research, Essen, GermanyMetagenomics reveal culture-independent insights into microbes´ diversityand the enzymes they feature [1, 3]. Lipolytic enzymes, namelycarboxylesterases (EC 3.1.1.1) and triacylglycerol lipases (EC 3.1.1.3),catalyze both hydrolysis and synthesis reactions on a broad spectrum ofsubstrates at various conditions rendering them especially suitable forbiotechnological applications. Most lipases used today originate frommesophilic organisms and are susceptible to thermal denaturation (Levissonet al. 2009). Here we report on the identification of novel thermostablearchaeal and bacterial lipases from three different microbial communities.Our metagenomic libraries were constructed from an enrichment usingheating water as inoculum, a long term soil enrichment culture and a deepseahydrothermal vent-derived enrichment. Cultures were maintained at 65°to 70°C and microbial communities characterized on a phylogenetic levelbased on 16S rRNA genes. Mainly thermophilic Firmicutes were identifiedin the soil enrichment after several months of incubation, while the heatingwater culture contained mostly novel Thermales. The hydrothermal ventculture consisted predominantly of archaeal species that are closely relatedto Thermococcales. The metagenomic libraries constructed from thedesignated enrichments comprised 800 to 8,500 clones. Screening of thelibraries on pNP-substrates (C 4 and C 12) at temperatures between 50°C and70°C resulted in the identification of 15 lipolytically active clones. Untilnow, three enzymes, LipS, LipT and LipZ have been expressedrecombinantly in E. coli and in P. antarctica and have been characterizedbiochemically. Current studies show a half life time of up to 48 h at 70°C(LipS) and 50 min at 90°C (LipZ). The temperature optima ranged between70°C (LipS) and 100°C (LipZ). All three enzymes are able to catalyze thehydrolysis of long-chain fatty acid esters like pNP-palmitate (C 16), -stearate(C 18) and -oleate (C 18:1; LipT), indicating lipase activity. Current workfocuses on further biochemical characterization with unusual substrates andsynthesis reactions in organic solvents as well as crystallographic analyses.[1] Handelsman, J. et al (1998): Molecular biological access to the chemistry of unknown soilmicrobes: a new frontier for natural products. Chem Biol 5(10): R245-9.[2] Levisson, M. et al (2009): Carboxylic ester hydrolases from hyperthermophiles. Extremophiles13(4): 567-81.[3] Steele, H. L. et al (2009):. Advances in recovery of novel biocatalysts from metagenomes. J MolMicrobiol Biotechnol 16(1-2): 25-37.GWP039Obtaining and selection haploids of distillery yeastsP. Patelski*, M. Balcerek, K. Pielech-Przybylska, J. Szopa, P. DziuganInstitute of Technology Fermentation and Microbiology, Biotechnology andFood Sciences, Technical University of Lodz, Lodz, PolandHaploidization is a crucial step during obtaining yeast strains with improvedtechnological properties by means of yeast sexual hybridization. This naturalmethod improving of industrial strains of yeast is used for over 60 years.Aim: The aim of this study was to obtain and isolate haploid cultures ofdifferent Saccharomyces cerevisiae strains, also evaluate them as a possiblestrains for conjugation and hybrids selection to obtain a new distillery yeastsfor fermentation of concentrated broths prepared from sugar beet juices.Methods: 9 strains of S.cerevisiae from our Pure Cultures Collection wereused in experiments: PA1, PA2, PA3, PS2, PS3, M2, M3, OH2, and BC16.2 strains: S.cerevisiae Ma and S.cerevisiae Mα - stable haploid markers withknown mating type were also used for mating type assay. Presporulationmedium containing sodium pyruvate, glucose, yeast extract, bacto-peptonewas used. Modified McClary medium: potassium acetate 10g/L, yeastextract 2,5g/L, glucose 0,2g/L, agar 25g/l, was used for sporulation. Haploidclones were obtained according to the procedure Johnston and Mortimerusing enzymes from Helix pomatia to asci walls digestion. Single sporeswere isolated from tetrads by using micromanipulator with glass needle.Yeast colonies grown out of individual spores were transferred to YPGslants.The criteria in selecting parent strains and their haploid clonesobtained from the spores were: morphological features, ability to fermentand assimilate selected sugars, ability to assimilate glycerol as well asfermentation of 20 and 25°Blg broths prepared from concentrated sugar beetjuice.spektrum | Tagungsband <strong>2011</strong>
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12 GENERAL INFORMATION · SPONSORS
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14 GENERAL INFORMATIONEinladung zur
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16 AUS DEN FACHGRUPPEN DER VAAMFach
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18 AUS DEN FACHGRUPPEN DER VAAMFach
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20 AUS DEN FACHGRUPPEN DER VAAMFach
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22 INSTITUTSPORTRAITMicrobiology in
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INSTITUTSPORTRAITGrundlagen der Mik
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26 CONFERENCE PROGRAMME | OVERVIEWT
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28 CONFERENCE PROGRAMMECONFERENCE P
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30 CONFERENCE PROGRAMMECONFERENCE P
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32 SPECIAL GROUPSACTIVITIES OF THE
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ISV01The final meters to the tapH.-
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ISV11No abstract submitted!ISV12Mon
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ISV22Applying ecological principles
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ISV31Fatty acid synthesis in fungal
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AMV008Structure and function of the
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pathway determination in digesters
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nearly the same growth rate as the
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the corresponding cell extracts. Th
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AMP035Diversity and Distribution of
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The gene cluster in the genome of t
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ARV004Subcellular organization and
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[1] Kennelly, P. J. (2003): Biochem
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[3] Yuzenkova. Y. and N. Zenkin (20
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(TPM-1), a subunit of the Arp2/3 co
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in all directions, generating a sha
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localization of cell end markers [1
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By the use of their C-terminal doma
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possibility that the transcription
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Bacillus subtilis. BiFC experiments
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published software package ARCIMBOL
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EMV005Anaerobic oxidation of methan
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esistance exists as a continuum bet
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ease of use for each method are dis
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ecycles organic compounds might be
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EMP009Isotope fractionation of nitr
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fluxes via plant into rhizosphere a
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EMP025Fungi on Abies grandis woodM.
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nutraceutical, and sterile manufact
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the environment and to human health
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EMP049Identification and characteri
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EMP058Functional diversity of micro
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EMP066Nutritional physiology of Sar
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acids, indicating that pyruvate is
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[1]. Interestingly, the locus locat
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OTP022c-type cytochromes from Geoba
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To characterize the gene involved i
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OTP037Identification of an acidic l
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OTP045Penicillin binding protein 2x
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[1] Fokina, O. et al (2010): A Nove
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PSP006Investigation of PEP-PTS homo
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PSP022Genome analysis and heterolog
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Correspondingly, P. aeruginosa muta
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RGP002Bistability in myo-inositol u
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a novel initiation mechanism operat
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RGP035Kinase-Phosphatase Switch of
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RGP043Influence of Temperature on e
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[3] was investigated. The specific
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transcriptionally induced in respon
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during development of the symbiotic
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[2] Li, J. et al (1995): J. Nat. Pr
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Such a prodrug-activation mechanism
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cations. Besides the catalase depen
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Based on the recently solved 3D-str
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SRP016Effect of the sRNA repeat RSs
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CODH after overexpression in E. col
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264 AUTORENBreinig, F.FBP010FBP023B
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266 AUTORENGoerke, C.Goesmann, A.Go
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268 AUTORENKlaus, T.Klebanoff, S. J
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270 AUTORENMüller, Al.Müller, Ane
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272 AUTORENScherlach, K.Scheunemann
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274 AUTORENWagner, J.Wagner, N.Wahl
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276 PERSONALIA AUS DER MIKROBIOLOGI
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278 PROMOTIONEN 2010Lars Schreiber:
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280 PROMOTIONEN 2010Universität Je
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282 PROMOTIONEN 2010Universität Ro
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Die EINE, auf dieSie gewartet haben