ISV11No abstract submitted!ISV12Monitoring of human pathogens and source identifiers indischarges across the United States: QMRA from sourceto bathing siteS. Wuertz* 1 , G. McBride 2 , W. Miller 3 , D. Wang 1 , A. Kundu 1 , D. Bambic 41 Department of Civil and Environmental Engineering, University ofCalifornia, Davis, Davis, USA2 National Institute of Water and Atmospheric Research (NIWA), Auckland,New Zealand3 Department of Pathology, Microbiology & Immunology, School ofVeterinary Medicine, University of California, Davis, USA4 AMEC Earth & Environmental, Nashville, USAThis study has increased knowledge about relationships between pathogenindicators, source identifiers and pathogens to support QuantitativeMicrobial Risk Assessment (QMRA) efforts and the implementation ofrevised recreational water quality criteria. Data gaps for waterbornepathogens and indicators in fecally-impacted discharges to recreationalwaters were identified and filled by targeted monitoring campaigns.Simultaneous detection of pathogens in water samples used genetic-,culture-, and microscopy-based methodologies for Salmonella,Campylobacter jejuni, Vibrio cholerae, Cryptosporidium, Giardia,Toxoplasma gondii, adenoviruses, enteroviruses, noroviruses, rotaviruses,Bacteroidales, Enterococcus, and Escherichia coli.The potential health risks associated with discharges-were estimated usingQMRA and three scenarios: primary contact by adults, secondary contact byadults and/or inhalation by persons of any age, and primary contact bychildren. The differences in these three scenarios were driven by differentwater ingestion rates (adults ingest more water during primary thansecondary contact; children ingest more water than adults; water inhalationrate is less than water ingestion rate for any age class). Norovirus posed themost dominant health risk followed by rotavirus. Norovirus andEnterococcus both had significant correlations with pathogens in discharges.Using the same DNA extracts from discharge samples, microbial sourcetracking qPCR data on the fecal source identifier Bacteroidales was obtainedand used in a new model to predict the true amount of human fecalcontamination in a water sample by relating a human-associated geneticmarker to a universal assay for fecal sources. The model output can be usedto implement and evaluate management options intended to restoremicrobial water quality.ISV13No abstract submitted!ISV14No abstract submitted!ISV15Xanthomonas TALEs - from plant pathogen weapon tobiotech hypeJ. Boch*, U. BonasInstitute of Biology, Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle (Saale), GermanyXanthomonas spp. are Gram-negative plant pathogenic bacteria withpowerful molecular weapons to attack their plant hosts. Key forpathogenicity of Xanthomonas is a type III secretion system that injects acocktail of effector proteins into plant cells to function as potent virulencefactors. TALEs (transcription activator-like effectors) constitute a majorfamily of Xanthomonas effectors that function as transcriptional activatorsof plant genes. The first TALE, AvrBs3, was identified 20 years ago. Today,more than 100 TALEs are known and all exhibit the same structuralfeatures: eukaryotic nuclear localisation sequences mediate import into theplant cell nucleus and a C-terminal activation domain is essential for targetgene activation. A fascinating characteristic of TALEs is their centralprotein domain of tandem, near-identical 34 amino-acid repeats. DifferentTALEs differ in the number and order of repeats which can be classified viatwo adjacent hypervariable amino acids. Importantly, the repeats wereshown to confer DNA-binding and only recently [1], the remarkably simpleDNA-target specificity code was cracked. Each TALE repeat recognizes asingle base pair in a contiguous DNA sequence and the variable diresiduesspecify the base that is bound. This uniquely modular DNA-binding codeallows to straightforwardly read the specificity of any TALE from its repeatsequence. In addition, the modular architecture allows a simplereprogramming of DNA-binding specificity. First powerful tools forbiotechnology have emerged.[1] Boch, J. et al (2009): Breaking the code of DNA binding specificity of TAL-type III effectors.Science 326, 1509-1512.ISV16Toxin producing endofungal bacteriaC. HertweckLeibniz Institute for Natural Product Research and Infection Biology, HansKnoll Institute (HKI) and Friedrich-Schiller-University, Jena, GermanyPathogenic fungi generally exert their destructive effects through virulencefactors. An important example is the macrocyclic polyketide rhizoxin, thecausative agent of rice seedling blight, from the fungus Rhizopusmicrosporus. The phytotoxin efficiently binds to rice ß-tubulin, whichresults in inhibition of mitosis and cell cycle arrest.By a series of experiments we could unequivocally demonstrate thatrhizoxin is not biosynthesized by the fungus itself, but by endosymbioticbacteria of the genus Burkholderia. Our unexpected findings unveil aremarkably complex symbiotic-pathogenic alliance that extends the fungus–plant interaction to a third, bacterial key player. In addition, we were able toculture the symbionts to produce antitumoral rhizoxin derivatives, and toelucidate the biosynthesis of the toxin. A second example for the formationof a ‘mycotoxin’ by endofungal bacteria is the cyclopeptide rhizonin.Surprisingly, in the absence of bacterial endosymbionts the fungal host isnot capable of vegetative reproduction. Formation of sporangia and spores isonly restored upon re-introduction of endobacteria. The fungus has becometotally dependent on endofungal bacteria, which in return provide a highlypotent toxin for defending the habitat and accessing nutrients from decayingplants.This talk highlights the significance of toxin-producing endofungal bacteriain the areas of ecology, medicine, and nutrition. Furthermore, progress instudying the molecular basis for the development and persistence of this raremicrobial interaction is presented.ISV17Plants and arbuscular mycorrhizal fungi: born to befriendsP. BonfanteDepartment of Plant Biology, University of Torino, ItalyArbuscular mycorrhizas (AMs) are symbiotic associations, which arecommonly described as the result of co-evolution events betweenGlomeromycota fungi and plants where both partners benefit from thereciprocal nutrient exchange. Data from fossil records, recentcharacterizations of AM fungi in basal plant taxa, and live cell imaging ofangiosperm colonization processes, indicate the ancient origin of AMinteractions. Among the conserved cellular mechanisms, the presence of asymbiotic interface compartment which allows fungal development insidethe cell lumen and maintains host cell integrity, is considered a landmark forAMs establishment.The presentation will focus on mechanisms which are associated with theperception of the AM fungus and its accommodation inside the lumen of thehost plant cell, leading to the assembly of the perifungal membrane andsymbiotic interface. Our findings, based on an in vivo confocal microscopyapproach, demonstrate that root cells perceive AM fungal signals and triggercalcium-mediated signaling in their nucleoplasm, both before and upondirect contact with the fungus. Nuclear calcium spiking seems to be a prerequisiteto the cellular reorganization that initiates after the adhesion of thefungal hyphopodium to the root and leads to the assembly of the so-calledprepenetration apparatus (PPA) inside one or a few contacted epidermalcells. Lastly, and at least in in vitro conditions, PPA is instrumental for theassembly of the interface construction.These features have been identified in legumes and in not-legume plants, butso far not in naturally collected plants or in lower taxa. Answers to thesespektrum | Tagungsband <strong>2011</strong>
questions may help to solve ongoing debate on plant-fungal co-evolutionand on the functional role of AMF in natural systems.ISV18The genomic standards consortium: Bringing standardsto LifeF.O. GlöcknerMicrobial Genomics and Bioinformatics, Max Planck Institute for MarineMicrobiology, Bremen, GermanyThe application of high-throughput sequencing technologies has transformedthe way microbiologists approach questions in their field. The shift ofsequencing capacity is now resulting in a dramatic increase in the amount ofdata available to a wider community, forming a rich stream of information.These data hold the promise of unparalleled insights into fundamentalquestions across a range of fields including evolution, ecology, environmentbiology, health and medicine. To fully exploit the promise of these data weneed both scientific innovation and community agreement on how toprovide appropriate stewardship of these resources for the benefit of all. Onekey insight into the function of a gene or organism is the environment whereit occurs. Collection of contextual (meta) data, which delineates the sourceof a sequence in terms of the space, time, habitat, and characteristics of theenvironment, is thus essential in interpreting the unknown genes andspecies, as well as gaining new insights into the known fraction. At present,the valuable contextual data halo is often missing for sequences deposited inthe International Nucleotide Sequence Database Collaboration (INSDC). In2005, members of the community came together to form the GenomicStandards Consortium (GSC), an open-membership working body with thestated mission of working towards better descriptions of our genomes,metagenomes, and related data (www.gensc.org). Supported by the expertiseof the members involved in many of the aforementioned mega-sequencingprojects, the GSC has formalized the contextual data requirements forgenomes and metagenomes as the Minimum Information about aGenome/Metagenome Sequence checklist (MIGS/MIMS) [1]. Furthermore,the extension of MIGS/MIMS to cover the description of phylogenetic andfunctional marker genes is in progress as the Minimum Information about anEnvironmental Sequence (MIENS) checklist(www.gensc.org/gc_wiki/index.php/MIENS) [2]. This family of minimuminformation checklists (MIxS) provides researchers with a condensed set ofcontextual data requirements, which range from description of theenvironment to sequencing procedures. Active participation to furtherdevelop the MIxS standards is highly appreciated. Requests for new featuresand reporting of bugs can be easily done via http://mixs.gensc.org.[1] Field, D. et al (2008): The minimum information about a genome sequence (MIGS) specification.Nat. Biotechnol. 26:541-547.[2] Yilmaz, P. et al, for the Genomic Standards Consortium (under revision) The „MinimumInformation about an ENvironmental Sequence” (MIENS) specification. Nat. Biotechnol.ISV19Standards in genomic sciences: A standards compliantopen-access journal for the ‘omics communityG. Garrity* 1 , N. Kyrpides 2 , D. Field 3 , P. Sterk 3,4 , H.-P. Klenk 51 Microbiology & Molecular Genetics, Michigan State University, EastLansing, USA2 DOE Joint Genome Institute, Walnut Creek, USA3 Center for Ecology & Hydrology, Molecular Evolution and BioinformaticsGroup, Oxfordshire, United Kingdom4 The Sanger Institute, Wellcome Trust Genome Campus, Hinkston Down,United Kingdom5 German Collection of Microorganisms and Cell Cultures (DSMZ),Braunschweig, GermanyStandards in Genomics Sciences (SIGS; www.standardsingenomics.org) isan Open Access eJournal that was created to promote the datastandardization efforts of the Genomic Standards Consortium (GSC) and toprovide a venue for publication of highly structured, MIGS compliantreports of genome and metagenome sequences, standard operatingprocedures, meeting reports, white papers and other articles that promote arein keeping with the objectives of the GSC. Whereas peer-reviewedcompanion publications of genomes were once commonplace in a number ofjournals, many general and discipline specific publications routinely declinesuch papers today. This leads to a loss of contextual information that isneeded for analyzing and interpreting genome sequence data.The GSC was founded in 2005 by an international community of likemindedscientists to work towards improving the descriptions of ourgrowing collection of genomes and metagenomes. Without metadatastandards, exchanging and integrating genomic data into analytical modelsand public knowledge bases increases while the overall value of eachadditional sequence diminishes. This is problematic because the ease andcost of producing sequence data have dropped sharply while the cost ofannotation and documentation have increased.At the time of writing, SIGS had already published over 100 articles,including more than 80 short genome reports that had been viewed by morethan 25,000 readers in 130 countries. SIGS is listed in CrossRef, TheDirectory of Open Access Journals (DOAJ) and PubMed Central and has,within a period of less than two years, become one of top five journalspublishing papers on new genome sequences.ISV20Reversing the paradigm -- The genome sequence ofCandidatus Sulfuricurvum sp. derived from a complexshort-read metagenome with more than 300 OTUsenables detailed studies of the novel epsilonproteobacterium.F. MeyerMathematics and Computer Science Division, Institute for Genomics andSystems Biology Argonne National Laboratory, Argonne, USACharacterizing genomes of unculturable microbes (most species on earth)requires new approaches for genome assembly from environmental samples,e.g. communities involved in bioremediation at the Old Rifle uraniumcontaminatedsite. Here we show we can reconstruct the complete genome(Candidatus Sulfuricurvum sp) via short-read metagenomics and novelapproaches for assembly based on simple statistical principles. Whileprevious examples of complete genome sequences from metagenomes stemfrom samples of very limited complexity (>10 OTUs), this sequence wasobtained from a complex mix of over 300 OTUs. Traditional approaches failbecause uneven numbers of sequence reads from common and rare species,and pan-genome variation, confuses traditional genome assemblers; specieswithout close relatives sequenced cannot co-assemble: without ourapproach, additional sequence data hurts rather than helps assembly. Inaddition, the metabolic reconstruction of this genome permitted cultivationof this dominant organism from an ecosystem relevant to bioremediation.This novel approach will allow the assembly of genomes and cultivation ofkey species from diverse environments/enrichment cultures, thus providingnew pangenomic insights into processes ranging from biofuel generation toidentification of emerging pathogens.ISV21Translocation of Oomycete effectors into host cellsP. van West*, S. Wawra, S. Grouffaud, C. R. Bruce, N. R. Horner, J. Bain,A. Matena, C. MM Gachon, I. de Bruijn, K. L. Minor, J. A. Boddey, S. C.Whisson, P. Bayer, P. R.J. Birch, A. J. Porter, C. J. SecombesAberdeen Oomycete Laboratory, College of Life Sciences and Medicine,Institute of Medical Sciences, University of Aberdeen, Foresterhill,Aberdeen, ScotlandThe fungus-like oomycetes contain several species that are devastatingpathogens of plants and animals. During infection several oomycetestranslocate effector proteins into host cells where they interfere with hostdefence responses. Several oomycete effectors have a conserved Arg-Xaa-Leu-Arg (RxLR)-motif that is thought to be important for their delivery. Wedemonstrate that, whereas the RxLR-leader sequence of SpHtp1 from thefish pathogen Saprolegnia parasitica shows fish cell-specific translocation,the RXLR-leader of AVR3a from the potato-late-blight pathogenPhytophthora infestans promotes efficient binding of the C-terminal effectordomain to several cell types. Our results demonstrate that the RxLR-leadersof SpHtp1 and AVR3a are dimerisation sites, able to form heteromers. Wefurther demonstrate that cell surface binding of both RxLR-proteins ismediated by an interaction with modified cell surface molecules. Theseresults reveal a novel effector translocation route based on effectordimerisation and receptor modification, which could be highly relevant for awide range of host-microbe interactions.spektrum | Tagungsband <strong>2011</strong>
- Page 3: 3Vereinigung für Allgemeine und An
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- Page 22 and 23: 22 INSTITUTSPORTRAITMicrobiology in
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- Page 42 and 43: 42 SHORT LECTURESWednesday, April 6
- Page 44 and 45: ISV01The final meters to the tapH.-
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nutraceutical, and sterile manufact
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the environment and to human health
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EMP049Identification and characteri
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EMP058Functional diversity of micro
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EMP066Nutritional physiology of Sar
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acids, indicating that pyruvate is
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[1]. Interestingly, the locus locat
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mobilized via leaching processes dr
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Results: The change from heterotrop
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for several years. Thus, microbiall
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species of marine macroalgae of the
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FBV003Molecular and chemical charac
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interaction leads to the specific a
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There are several polyketide syntha
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[2] Steffen, W. et al. (2010): Orga
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three F-box proteins Fbx15, Fbx23 a
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orange juice industry and its utili
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FBP035Activation of a silent second
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about 600 S. aureus proteins from 3
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FGP011Functional genome analysis of
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hyperthermophilic D-arabitol dehydr
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GWV012Autotrophic Production of Sta
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EPS matrix showed that it consists
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enzyme was purified via metal ion a
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GWP047Production of microbial biosu
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function, activity, influence on gl
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selected phyllosphere bacteria was
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groups. Multiple isolates were avai
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Dinoroseobacter shibae for our knoc
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Here, we present a comparative prot
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MPV009Connecting cell cycle to path
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MPV018Functional characterisation o
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dependent polar flagellum. The torq
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(ciprofloxacin, gentamicin, sulfame
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that can confer cell wall attachmen
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MPP040Influence of increases soil t
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hemagglutinates sheep erythrocytes.
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about 600 bacterial proteins from o
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an un-inoculated reference cell, pr
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NTP019Identification and metabolic
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OTV008Structural analysis of the po
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and at least 99.5% of their respect
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OTP022c-type cytochromes from Geoba
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OTP037Identification of an acidic l
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OTP045Penicillin binding protein 2x
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[1] Fokina, O. et al (2010): A Nove
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PSP006Investigation of PEP-PTS homo
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The gene product of PA1242 (sprP) c
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a novel initiation mechanism operat
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RGP035Kinase-Phosphatase Switch of
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RGP043Influence of Temperature on e
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[3] was investigated. The specific
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transcriptionally induced in respon
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[2] Li, J. et al (1995): J. Nat. Pr
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Such a prodrug-activation mechanism
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cations. Besides the catalase depen
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Based on the recently solved 3D-str
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SRP016Effect of the sRNA repeat RSs
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264 AUTORENBreinig, F.FBP010FBP023B
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266 AUTORENGoerke, C.Goesmann, A.Go
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268 AUTORENKlaus, T.Klebanoff, S. J
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270 AUTORENMüller, Al.Müller, Ane
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272 AUTORENScherlach, K.Scheunemann
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274 AUTORENWagner, J.Wagner, N.Wahl
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276 PERSONALIA AUS DER MIKROBIOLOGI
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278 PROMOTIONEN 2010Lars Schreiber:
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280 PROMOTIONEN 2010Universität Je
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282 PROMOTIONEN 2010Universität Ro
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Die EINE, auf dieSie gewartet haben