Such a prodrug-activation mechanism seems to be more widespread innature as we could already identify several other biosynthesis gene clustersin different bacterial genera indicating a highly similar mechanism.[1] Goodrich-Blair, H. (2007): Curr. Opin. Microbiol, 10, 225-230.[2] Herbert, E. E. (2007): Nat. Rev. Microbiol, 5, 634-646.[3] Forst, S. (1997): Annu. Rev. Microbiol, 51, 47-72.[4] Ciche, T. A. (2001): J. Bacteriol, 183, 3117-3126.[5] McInerney, B. V. (1991): J. Nat. Prod, 54, 785-795.[6] Reimer, D. (2009): ChemBioChem, 10, 1997-2001.[7] Park, D. (2009): Mol. Microbiol, 73, 938-949.SIP021Evolution and biogeography of deep-sea bathymodiolinemussel symbiosesK. van der Heijden*, C. Borowski, N. DubilierDepartment of Molecular Ecology - Symbiosis Group, Max Planck Institutefor Marine Microbiology, Bremen, GermanyMytilid mussels of the subfamily Bathymodiolinae host endosymbioticbacteria and are key species in habitats such as hydrothermal vents,hydrocarbon seeps, sunken wood and whale bone falls. Their symbiontsoxidize reduced compounds such as sulfide and methane. The gained energyis used for assimilation of carbon that they transfer to their hosts, thuscontributing significantly to their hosts′ nutrition. Many host species areassociated with sulfur oxidizers, others harbor methane oxidizers, and anumber of species host both functional types co-occurring in a dualsymbiosis.Bathymodiolinae are known from all ocean basins, although most speciesare bound to a specific habitat type depending on their type of symbiontsand adequate substrate availability. It was hypothesized that the subfamilyoriginated in reducing shallow water habitats and immigrated into the deepseahydrothermal vent habitats by using sunken wood, whale falls andhydrocarbon seeps as stepping stones. In order to test this hypothesis, weanalyzed the phylogenies of the hosts and their symbionts and integratedthem with ecological data such as biogeography, habitat type, substrateavailability, depth and types of associated symbionts of a specific hostspecies to test for the presence of correlations. We are examining musselspecies from vents and seeps worldwide. For reconstruction of the hostphylogeny we have analyzed three marker genes, the mitochondrialcytochrome oxidase subunit I (COI) and the NADH-dehydrogenase subunit4 (ND4) genes, and the nuclear 28S rRNA gene. The phylogeny of thebacterial endosymbionts is based on analysis of the 16S rRNA. The resultsof these analyses will give us insight into the evolution of the symbioticinteractions and colonization history of chemosynthetic habitats.SRV001Molecular mechanisms governing the three-componentsystem HbpS-SenS-SenR from Streptomyces reticuliD. Ortiz de Orué Lucana*, M. Roscher, H. SchrempfDepartment of Biology and Chemistry, University of Osnabrück, Osnabrück,GermanyThe novel three-component signalling system HbpS-SenS-SenR from thecellulose degrader Streptomyces reticuli has been shown to sense redoxsignals and to provide this bacterium with an efficient defence systemagainst oxidative stress [1]. The heme-binding and oligomer-forming proteinHbpS is extracellularly located. It interacts with the membrane-embeddedsensor kinase SenS from the two-component system SenS-SenR. Furtheranalyses revealed that the octameric assembly of HbpS is essential for theinteraction with SenS [2]. Furthermore, HbpS has been shown to modulatethe phosphorylation state of the sensor kinase SenS as, in the absence ofoxidative stress conditions, HbpS inhibits SenS autophosphorylationwhereas the presence of heme or iron ions and redox-stressing agentsenhances it [2].Using a number of genetic, biochemical, structure and biophysicalapproaches including site-directed mutagenesis, FRET, CD spectroscopy,fluorescence spectroscopy and immunoblotting, we have demonstrated thatiron-mediated oxidative stress induces both secondary structure and overallintrinsic conformational changes within HbpS. We showed in addition thatHbpS is oxidatively modified, leading to the generation of highly reactivecarbonyl groups and tyrosine-tyrosine bonds [3]. Therefore, it can beproposed that iron-mediated oxidative modifications causing structural andconformational changes in HbpS are responsible for the control of the HbpS-SenS-SenR signalling cascade.[1] Ortiz de Orué Lucana, D. and M.R. Groves (2009): Amino Acids, 37:479-486.[2] Ortiz de Orué Lucana, D. et al (2009): J Mol Biol, 386: 1108-1122.[3] Ortiz de Orué Lucana, D. et al (2010): J Biol Chem, 285: 28086-28096.SRV002Anoxygenic photosynthesis and photooxidative stress: Aparticular challenge for RoseobacterJ. Glaeser* 1 , B. Berghoff 1 , A. Nuss 1 , M. Zobawa 2 , F. Lottspreich 2 , G. Klug 11 Institute for Micro- and Molecular Biology, Justus-Liebig-University,Gießen, Germany2 Protein Analytics, Max-Planck-Insititut für Biochemie, Martinsried,GermanyRoseobacter clade aerobic anoxygenic photosynthetic bacteria are abundantin photic zone environments of marine ecosystems. These bacteria performanoxygenic photosynthesis under oxic conditions, a situation known togenerate singlet oxygen ( 1 O 2) in the closely related anoxygenic phototrophRhodobacter sphaeroides [1]. Compared to Rhb. sphaeroides,photosynthetic membranes of Roseobacter denitrificans generated three foldmore 1 O 2 during light exposure and consequently the key regulator genesrpoE and rpoH II [2, 3] of Rsb. denitrificans were much stronger induced inresponse to 1 O 2 stress compared to Rhb. sphaeroides. The regulon controlledby RpoE was different in R. denitrificans and Rhb. sphaeroides and patternsof synthesized soluble proteins strongly changed upon high light exposure inRsb. denitrificans, but not in Rhb. sphaeroides. Changes in the proteomewere not further promoted by artificial 1 O 2 generation, which indicates thatlight alone generates high levels of 1 O 2 in Rsb. denitrificans. The strongincrease of the small RNA RDs2461 by photooxidative stress [4] implies arole of sRNAs in post-transcriptional regulation of the response to 1 O 2 inRsb. denitrificans. Overall, our data reveal similarities but also significantdifferences in the response of Rsb. denitrificans and Rhb. sphaeroides to1 O 2, most likely a consequence of their different life styles [5].[1] Glaeser J. and Klug G. (2005) Microbiology 151: 1927-1938[2] Anthony, J. R. et al (2005): P Natl Acad Sci USA 102: 6502-6507[3] Nuss A. M. et al (2009): J Bacteriol 191: 220-30[4] Berghoff, B. A. et al (2009): Mol Microbiol 74: 1497-1512[5] Berghoff, B. et al (<strong>2011</strong>): Environ Microbiol DOI: 10.1111/j.1462-2920.2010.02381.xSRV003The apoptosis inducing factor (AIF)-like mitochondrialoxidoreductase (aifA) mediates reistance towards thePenicillium chryosgenum antifungal protein PAF inAspergillus fumigatusA. Eigentler 1 , B. de Castro Pimentel Figueiredo 2 , T. Magnani Dinamarco 2 ,G.H. Goldman 2 , Gustavo H. Goldman 2 ,F.Marx* 11 Biocenter, Division of Molecular Biology, Innsbruck Medical University,Innsbruck, Austria2 Faculdade de Ciencias Farmaceuticas de Ribeirao Preto, Universidade deSao Paulo, Sao Paulo, BrazilThe antifungal protein PAF from Penicillium chrysogenum is a secretedlow-molecular weight, cysteine-rich and cationic protein that inhibits thegrowth of the zoopathogen Aspergillus fumigatus. Thus PAF represent apromising candidate for the development of novel antimycotic strategies anda detailed characterization of its mode of action is essential.By the use of a genome wide gene expression analysis in A. fumigatus aderegulation of genes involved in oxidative phosphorylation and oxidativestress response after exposure to PAF was determined. Indeed, we observedan increased level of reactive oxygen species (ROS) in PAF-treated hyphae.The determination of the mitochondrial respiration efficiency, the ATPproduction and the copy number of mitochondrial DNA indicated that thederegulation of mitochondrial genes in response to PAF primarily resultedfrom a mitochondrial malfunction but not from a reduction of themitochondrial number. The deletion of the mitochondrial aifA gene resultedin the hypersensitivity of A. fumigatus towards PAF which underlines thefunction of AIFA in the detoxification of PAF-induced ROS. From theseresults we conclude that induction of oxidative stress and mitochondrialmalfunction are central features of PAF toxicity which can finally lead toprogrammed cell death as previously shown [1] .[1] Leiter, É. et al (2005): The antifungal protein PAF severely affects the integrity of the plasmamembrane of Aspergillus nidulans and induces an apoptosis-like phenotype. Antimicrob. AgentsChemother.49: 2445-2453.spektrum | Tagungsband <strong>2011</strong>
SRV004A novel type of DNA photolyase containing an iron sulfurclusterI. Oberpichler* 1 , J. Wesslowski 1 , R. Pokorny 2 , R. Rosen 3 , F. Zhang 1 ,O. Neubauer 4 , A. Batschauer 2 , E. Ron 3 , T. Lamparter 11 Botany I, <strong>Karlsruhe</strong> Institute of Technology (KIT) Campus South,<strong>Karlsruhe</strong>, Germany2 Molecular Plant Physiology, Philipps-University, Marburg, Germany3 Department of Molecular Microbiology and Biotechnology, Tel AvivUniversity, Tel Aviv, Israel4 Institute for Microbiology, Humboldt-University, Berlin, GermanyPhotolyases and cryptochromes are evolutionarily related flavoproteins withdistinct functions. While photolyases can repair UV-induced pyrimidinedimers on the DNA in a light dependent manner, cryptochromes regulategrowth, development and the circadian clock in plants and animals. Here wereport about a photolyase related protein, named PhrB, found in thephytopathogen Agrobacterium tumefaciens. Phylogenetic studies showedthat PhrB belongs to a new class which we designate bacterial cryptochromeand photolyase proteins (BCP). It contain FAD as a catalytic cofactor and asecond chromophore that absorbs in the short wavelength region, but withspectral properties distinct from other known photolyase antenna cofactors.Alignment of protein sequences suggests that the classical photoreductionpathway consisting of three tryptophans, is absent in PhrB. Moreover,structure modelling revealed four cystein residues that seem to be clusteredpossibly for the coordination of an iron sulfur cluster and the presence ofiron in a 4:1 stochiometry was confirmed experimentally. Although PhrB isclearly distinguished from other photolyases it is required for photorepair ofUV-lesions in A. tumefaciens. We thus propose that PhrB is a functionalphotolyase which represents the first member of this protein family thatcontains an iron-sulfur cluster.SRV005Specific control of hypochlorite resistance by the redoxsensingMarR/DUF24-type regulator HypR in BacillussubtilisB.K. Chi 1 , G. Palm 2 , K. Gronau 1 , U. Mäder 1 , D. Becher 1 , W. Hinrichs 2 ,M. Hecker 1 , H. Antelmann* 11 Institute for Microbiology, Ernst-Moritz-Arndt-University, Greifswald,Germany2 Institute of Biochemistry, Ernst-Moritz-Arndt-University, Greifswald,GermanyBacillus subtilis encodes several redox-sensing MarR-type regulators of theOhrR and DUF24-families that are conserved among Firmicutes and controloxidative stress resistance and virulence functions in pathogenic bacteria viathiol-based redox-switches. While most characterized members of the OhrRfamily respond to organic hydroperoxides, the DUF24-family regulatorsYodB, CatR and HxlR were shown to sense specifically electrophiles suchas diamide, quinones or aldehydes. However, the genome of Bacillus subtilisencodes additional DUF24 family regulators of unknown functions and wewere interested whether any of these is involved in oxidative stressresistance mechanisms. We used DNA microarray analysis to analyseexpression changes in B. subtilis in response to the strong oxidanthypochloric acid (HOCl) which is present in house-hold bleach. The overalltranscriptional response of B. subtilis to HOCl is indicative of disulfidestress and overlapping to the response provoked by the thiol-oxidizingelectrophile diamide. The glyceraldehyde 3-phosphate dehydrogenase GapAwas most strongly oxidized to an intramolecular disulfide by HOCl stressamong cytoplasmic proteins as shown by redox proteomics and massspectrometry. We further identified an unknown DUF24-type transcriptionalregulator as novel hypochlorite-specific redox sensor which we accordinglyrenamed as HypR. HypR controls positively an oxidoreductase (HypO) thatconfers specific protection against HOCl stress in B. subtilis. The conservedN-terminal Cys residue of HypR is essentiell for activation of hypOtranscription by HOCl stress in vitro and in vivo. HypR resembles a 2-Cystype redox sensing regulator of the DUF24 family that is activated byintersubunit disulfide formation in response to HOCl stress in vitro and invivo as confirmed by mass spectrometry. Crystallization trials and structuralrefinements of oxidized and reduced HypR proteins are in progress tosupport the thiol-disulfide switch model for this novel transcriptionalactivator. Collectively our studies have revealed that the conservedMarR/DUF24 family is able to sense selectively electrophiles (diamide,quinones and aldehydes) and strong oxidants such as HOCl. Bleach is notonly present in the soil environment of B. subtilis but also released byactivated macrophages upon the infection process. Thus, the function of theDUF24 family among pathogenic Gram-positives could be to protect cellsagainst the host immune defense.SRV006Structural studies on the Iron core formation inMarinobacter hydrocarbonoclasticus DpsC. Hernandez* 1 , A. Pereira 2 , P. Tavares 2 , S. Andrade 11 Institute of Organic Chemistry and Biochemistry, Albert-Ludwigs-University, Freiburg im Breisgau, Germany2 Center of Fine Chemistry and Biotechnology, New University of Lisbon,Requimte, Monte de Caparica, PortugalIron is an essential element for the vast majority of organisms. Among othercharacteristics, its capacity to cycle between two (or more) redox states (Fe 2+or Fe 3+ ) made it an attractive element to use in the catalytic active site ofseveral enzymes [1]. In the reduced Fe 2+ ferrous state iron is relativelysoluble. In the oxidized Fe 3+ form, however, it becomes insoluble andconsequently its bioavailability in our modern oxidative atmosphere isseverely decreased [2]. Additionally, in the presence of oxygen, iron sitescan become a source of unwanted oxygen reactive species such assuperoxide or hydrogen peroxide. To overcome this problem, iron must bekept in a non-toxic reduced form, in the cell. Dps proteins (DNA-bindingprotein from starved cells), widely spread in bacteria, are highly important inthe bacterial response against oxidative stress. They are members of theferritin superfamily but, contrary to ferritins that are only involve in thebiomineralization and iron storage, Dps proteins have the capacity todetoxify the cell by removing hydrogen peroxide and ferrous iron andtherefore the ability to protect DNA against oxidative damage [3]. Dpsproteins are dodecamers with a two-fold symmetry in the dimer. Theferroxidase center lies at the interface between two monomers and has ahighly specific and conserved motif among Dps proteins; a HW pair in helixI and H-14-DXXXE in helix II where the histidines, aspartate, andglutamine residues are the iron ligands [4,5]. Despite the high conservationof these iron ligands, the occupancy of the two metal binding site differssignificantly in known crystal structures [6]. Using X-Ray crystallography incombination with spectroscopic data we are investigating the intermediatesstages of iron core formation in a Dps protein from Marinobacterhydrocarbonoclasticus.[1] Le Brun , N. E. et al (2010): Biochemica et Biophysica Acta, 1800, 732-744.[2] Bou-Abdallah , F. (2010): Biochemica et Biophysica Acta, 1800, 719-731.[3] Almiron, M. et al (1992): Genes & Development, 6, 2646-2654.[4] Andrews, S. C. (2010): Biochemica et Biophysica Acta, 1800, 691-705.[5] Ilari, A. et al. (2000): Nature Structural & Molecular Biology, 38-43.[6] Chiancone, E. & P. Ceci (2010): Biochemica et Biophysica Acta, 1800, 798-805.SRV007Characterisation of the oxidative stress response in C.glutamicumK. Marin* 1 , C. Lange 1 , C. Trötschel 2 , D. Seiferling 1 , I. Ochrombel 1 ,A. Poetsch 2 , R. Krämer 11 Institute of Biochemistry, University of Cologne, Cologne, Germany2 Plant Biochemistry, Ruhr-University, Bochum, GermanyAerobic bacteria are exposed to oxidative stress as daily problem because ofthe permanent endogenous formation of reactive oxygen species likehydrogen peroxide (H 2O 2). The cellular sources of ROS are manifold andbecause of the damage of cellular components the enzymatic removal ofROS, e.g. by catalase, plays a pivotal role in the bacterial oxidative stressresponse. Interestingly, knowledge on oxidative stress response of C.glutamicum is scarce in spite it is applied in large scale industrialfermentations and exposed to rigorous variations of the oxygen supply.Interestingly, the catalase of C. glutamicum has an extraordinary highactivity promoting its industrial production. Why does C. glutamicumpossess a highly active catalase and does the non-constitutive expression ofthe catalase gene cause metabolic limitations?We addressed the oxidative stress response of C. glutamicum and thecontribution of the catalase by comparing a catalase mutant and wild typecells. Whereas wild type cells tolerate exposure to 1 M H 2O 2 cells of themutant are highly sensitive and can not grow in presence of 1 mM H 2O 2.Additionally, an increased sensitivity towards alkaline pH and increased ironavailability was found. By using in vitro experiments the significant impactof low amounts of ferrous iron on protein oxidation was shown by theOxyblot TM technique and compared with the impact of other divalentspektrum | Tagungsband <strong>2011</strong>
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8 GENERAL INFORMATIONGeneral Inform
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14 GENERAL INFORMATIONEinladung zur
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22 INSTITUTSPORTRAITMicrobiology in
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INSTITUTSPORTRAITGrundlagen der Mik
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28 CONFERENCE PROGRAMMECONFERENCE P
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ISV01The final meters to the tapH.-
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ISV11No abstract submitted!ISV12Mon
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ISV22Applying ecological principles
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ISV31Fatty acid synthesis in fungal
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AMV008Structure and function of the
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pathway determination in digesters
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nearly the same growth rate as the
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the corresponding cell extracts. Th
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ARV004Subcellular organization and
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[1] Kennelly, P. J. (2003): Biochem
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[3] Yuzenkova. Y. and N. Zenkin (20
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(TPM-1), a subunit of the Arp2/3 co
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in all directions, generating a sha
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localization of cell end markers [1
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possibility that the transcription
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Bacillus subtilis. BiFC experiments
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published software package ARCIMBOL
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EMV005Anaerobic oxidation of methan
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esistance exists as a continuum bet
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ease of use for each method are dis
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EMP009Isotope fractionation of nitr
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fluxes via plant into rhizosphere a
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nutraceutical, and sterile manufact
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the environment and to human health
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EMP049Identification and characteri
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acids, indicating that pyruvate is
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[1]. Interestingly, the locus locat
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mobilized via leaching processes dr
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Results: The change from heterotrop
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favorable environment for degrading
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for several years. Thus, microbiall
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species of marine macroalgae of the
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FBV003Molecular and chemical charac
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interaction leads to the specific a
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There are several polyketide syntha
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three F-box proteins Fbx15, Fbx23 a
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orange juice industry and its utili
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FBP035Activation of a silent second
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lignocellulose and the secretion of
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about 600 S. aureus proteins from 3
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FGP011Functional genome analysis of
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FMV001Influence of osmotic and pH s
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microbiological growth inhibition t
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FMP017Prevalence and pathogenicity
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hyperthermophilic D-arabitol dehydr
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GWV012Autotrophic Production of Sta
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EPS matrix showed that it consists
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enzyme was purified via metal ion a
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GWP016O-demethylenation catalyzed b
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GWP047Production of microbial biosu
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Based on these foregoing works we h
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function, activity, influence on gl
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selected phyllosphere bacteria was
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groups. Multiple isolates were avai
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Dinoroseobacter shibae for our knoc
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Here, we present a comparative prot
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MPV009Connecting cell cycle to path
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MPV018Functional characterisation o
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dependent polar flagellum. The torq
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(ciprofloxacin, gentamicin, sulfame
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that can confer cell wall attachmen
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MPP040Influence of increases soil t
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hemagglutinates sheep erythrocytes.
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about 600 bacterial proteins from o
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