Transcriptional Characterization of Glioma Neural Stem Cells Diva ...

6.7 Isoform Differential Expression Results
· AKT2: two reads map on the 3'UTR of the longest isoform whilst one
read maps on the 3'UTR of a shorter subset of isoforms;
· AKT3: two reads map on the shortest isoform and one on the 3'UTR
and intron of the middle and longest isoforms, respectively;
· BMP7: one read maps on the 3'UTR of the longest isoform and one read
on the 3'UTR of a middle-length set isoforms;
· BRCA1: one read maps on the 3'UTR of the longest isoform, whilst one
read maps on an alternatively spliced exon, contained in a small subset
of isoforms and which is a single isoform itself;
· CANX: all six reads map onto the 3'UTR of the longest isoform, one on
the 3'UTR of a shorter isoform;
· CTSB: three reads identify three different isoforms on their 3'UTRs;
· ERBB2: two reads map on the 3'UTRs of two different isoforms (but
one is not recognised by Ensembl Gene Predictions);
· FGFR1: two reads map on the 3'UTRs of two different isoforms;
· GRIA2: three reads identify three sets of lengths of isoforms on their
3'UTRs with one identifying two of them;
· HLA-A: two reads identify two different isoforms on their 3'UTR;
· NBR1: one read maps on the 3'UTR of the longest isoform and one read
on a consistently present exon, which identifies also a shorter isoform;
· NFYC: two reads identify 3'UTRS of two different isoforms with one
mapping between the 3'UTRs and last intron;
· PTEN: two reads map on the 3'UTR of the longest isoform and on the
3'UTR of a much shorter isoform;
· RFX5: one read maps on the 3'UTR of two longer isoforms and one
identifies a smaller subset of shorter ones on the 3'UTR;
· NTRK2: two reads mapping on alternative 3'UTRs;
· FGFR10P: one read maps on the 3'UTR and one on the fifth exon, which
is displayed as a 3'UTR box on the Ensembl Prediction track;
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