Transcriptional Characterization of Glioma Neural Stem Cells Diva ...

C. Long ncRNAs Appendix
Tag Accession Description In gene desert? PubMedID(s) Differential expression results Normalised tag counts
log 2(F C) p-value FDR G144ED G144 G166 G179 CB541 CB660
Yes None 5.95 5.4E-05 3.7E-02 4.2 0.0 96.3 95.6 0.0 2.1
AAATATGGATAAATGTA CA425887
Yes None Inf 9.3E-10 4.9E-06 263.9 566.0 8.8 3.7 0.0 0.0
AAATTGGTGCTGTTGCT BM679519
No None -4.65 1.6E-05 1.4E-02 34.0 27.7 4.5 2.4 354.0 224.1
GAAGGTCCCCCAGGGGT AK131287
Yes None Inf 7.3E-06 7.5E-03 12.5 126.1 0.0 50.3 0.0 0.0
Transcript from gene desert around
FOXG1. Overlaps an EST similar
to a region of downstream of the
pseudoautosomal gene SPRY3.
Transcript from gene desert harboring
ZNF536 and TSHZ3. Correlated
with ZNF536 expression.
Intergenic transcript, or possibly a
very long CACNG8 3’-UTR extension.
Might be a host transcript for
mir-935.
Transcript from gene desert around
KCNF1.
Transcript from gene desert upstream
of SIX3. Correlated with
SIX3 expression.
Transcript from gene desert downstream
of SIX3. Correlated with
SIX3 expression.
Transcript from gene desert downstream
of SIX3. Correlated with
SIX3 expression.
Transcript from gene desert near
DCBLD2.
Transcript from gene desert near
IRX2. Correlated with IRX2 ex-
GAATACAGATTAATCCT BG201257
Yes 17084678 -Inf 6.9E-08 1.8E-04 0.0 0.0 0.0 0.0 162.1 173.2
ATCATCACGTGAGAGAT AK126832
Yes 17084678 -Inf 4.2E-07 7.2E-04 0.0 0.0 0.0 0.0 123.7 142.3
TATAATAATAATGCTTA GD259214
275
Yes 17084678 -Inf 1.3E-05 1.2E-02 0.0 0.0 0.0 0.0 44.3 125.7
GAGAGTGAATGTTTAAA CR623536
Yes None 6.14 1.3E-06 1.9E-03 0.0 0.0 103.5 225.2 0.0 3.1
TACACAATAAATATTTA BG166405
Yes None -Inf 2.9E-05 2.2E-02 0.0 0.0 0.0 0.0 80.4 35.2
ATAATAAAAGTATTTTT AA993778
pression.
No (1688605) Inf 1.2E-04 6.9E-02 4.2 6.1 73.4 27.6 0.0 0.0
Transcript downstream of HLA-
F, on opposite strand. Overlaps
an antisense transcript to HLA-F
(NR_026972).
TTTTTCATCAAGAGGAA DB349183