Appendix B Literature Mining Script It should be noted that the text preceded by the single quotation mark sign (’) that appears in italic typeface is a comment and not code that should be executed. Public Class Form1 ’GBMbase iHOP PubMed BioGraph Google Scholar Google Search Dim genes() As String = {"SFTA3", "SLC4A4", "STRA6", "IL6", "SNX22", "COL21A1", "CA12", "CCND2", "SPINT1", "INHBA", "GFAP", "GPC3", "HOXC10", "PDE1C", "FAM70A", "GEM", "KALRN", "NTN1", "INHBB", "CCNO", "C10orf81", "CTNNA2", "APLN", "VAX1", "PCDHB4", "KCTD12", "ELN", "IFI30", "BMP8B", "CAMK2B", "LMO2", "TECRL", "RGS5", "NOV", "MOCOS", "SCN1B", "TNFSF4", "C14orf143", "LRRC2", "PLS3", "AP000280.1", "C21orf62", "C10orf116", "VIPR1", "ELMO1", "UGT8", "SH3BGR", "LIF", "MX1", "LRAT", "FXYD3", "CNTN6", "NNMT", "ZIC5", "GBP2", "TRIM47", "FAM196A", "C10orf141", "LMO4", "MYC", "RTP4", "C9orf125", "DPY19L1", "FCGR2B", "FCGR2C", "FCGR2A", "MAPT", "SLC15A2", "TGM2", "IRX2", "PCDH20", "ANGPTL1", "IL17RD", "ARC", "CHCHD10", "MAF", "CD55", "FBXO27", "PDZRN3", "ETS1", "SGCD", "CITED4", "MAP3K5", "STXBP5L", "ECHDC2", "CTSC", "MICA", "MMP17", "AC068399.1", "VIT", "TSHZ3", "CXXC4", "CABP7", "KCNMB2", "MT2A", "MYH3", "HOXD13", "STEAP2", "SLC4A11", "CCL7", "IFI27", "SPARCL1", "TNNI1", "OAS2", "TRPM8", "THBS2", "DOCK10", "ZIC2", "IFI6", "TNNI2", "CARD17", "CASP1", "CARD16", "ATOH8", "DNER", "FAM189A1", "SALL2", "C10orf11", "EEF1D", "WB- SCR17", "TUBA4A", "RHBDF2", "PARP3", "MAN1C1", "DDO", "F12", "SPTBN5", "TGFA", "ZNF536", "HLA-DQB1", "IFITM2", "DNM3", "JPH1", "FAM69A", "CACNA1C", "ESRRG", "ITM2A", "SKAP2", "TRAM1L1", "NDN", "PLCH1", "KCNJ12", "NXPH1", "MYBL1", "DUSP5", "NTRK2", "RNF175", "HOMER1", "PTEN", "CMPK2", "TBC1D8", "TRIB3", "CDHR1", "SYNM", "LUM", "SEMA6A", "ADRA2A", "STAMBPL1", "TSPAN7", "PYGL", "FOXJ1", "ZNF454", "EML2", "GABRQ", "EPAS1", "ERBB4", "RAB6B", "LXN", "MYL9", "BGN", "FUT8", "GRIA3", "ARHGEF7", "SLC2A5", "MMP7", "TMEM132D", "PION", "C5orf13", "SOD2", "PDGFA", "LOXL4", "SPP1", "BATF3", "SNAP25", "SULF2", "LPAR6", "EPDR1", "EPHB3", "TSLP", "TMCO4", "SERPINE2", "TUSC3", "VSNL1", "ATAD3C", "MARCH1", "DKK1", "CEBPB", "NFE2L3", "TNNC2", "ODZ2", "OAS1", 266
Appendix "BEX5", "DIAPH2", "GBP3", "SORCS3", "SOX3", "FOXG1", "LRRN2", "ELMO2", "MAP6", "TRIM48", "CNKSR2", "MOSC2", "CRYBB2", "GJA1", "ELOVL2", "B4GALNT1", "C10orf90", "FBN2", "SMOC2", "ZIC3", "RARRES3", "GBP1", "EFEMP1", "GPR98", "PLD3", "OLFM1", "CCDC64", "MGLL", "THY1", "CPLX2", "FAM150B", "MKI67", "AC092296.1", "PHACTR3", "TNFRSF14", "NRG1", "RAB38", "ABAT", "NRBF2", "CLDN10", "C1orf94", "NELL2", "CYB5R2", "TNC", "HLA-A", "PPCS", "SORL1", "SHROOM3", "SLC38A1", "FXYD5", "CILP", "OGN", "MARVELD3", "APOD", "LEMD1", "DOCK5", "GBP4", "KCNA2", "FAM55C", "NFKBIZ", "RGL3", "HLA-DPB1", "XXbac-BPG116M5.1", "C2", "CFB", "NRP2", "HPSE", "CPNE5", "SMAGP", "FAM84A", "LOC653602", "NR4A2", "PERP", "ZNF281", "NID1", "ACIN1", "FOXQ1", "MATN2", "IRAK1", "NDE1", "COL8A1", "TFAP2A", "C1S", "ST6GAL1", "CD97", "ID4", "IGSF3", "NAMPT", "RP11-473I1.1", "EPB41L3", "NOTCH3", "GALNT5", "NLGN4X", "PITPNC1", "KLF6", "B3GNT9", "RIPK4", "S100B", "GYG2", "LOC283070", "CAMK1D", "ZNF747", "HOXA7", "NMU", "RAB7L1", "STX3", "SRGAP3", "CNTN1", "ATP1B2", "MAP7", "ADAMTS4", "F2RL1", "MIA", "MLC1", "ARHGAP20", "C4orf32", "EDA2R", "OTX2", "MEIS2", "SPRED1", "PPEF1", "TCF7", "TFCP2", "HPRT1", "TTF2", "SLITRK5", "PXDN", "MIPOL1", "SYT1", "CXCL14", "ETS2", "PPHLN1", "NBL1", "GDPD2", "SDC2", "ADAMTS10", "C6orf138", "ICAM1", "SELENBP1", "C7orf40", "GALR1", "SFRP1", "IGSF11", "MTTP", "RRS1", "RGAG4", "BTBD11", "PHLPP1", "RGS17", "NCAM1", "MID1IP1", "TMEM200B", "CRYBB1", "KANK1", "MT1A", "SHOX2", "PLS1", "H1F0", "SEMA3D", "ITGA4", "ZIC4", "SPINK2", "SLC38A5", "LINGO1", "FAM184B", "NR1D1", "SQRDL", "SPAG4", "HOXD9", "HAND2", "LIFR", "MYO1B", "TPMT", "PCDHB3", "SHISA2", "XYLT1", "REC8", "NFATC2", "TOX", "STC2", "FAM126A", "GAL", "CPAMD8", "HLA-DQA1", "SRPX", "GJB2", "HOXB6", "HIF3A", "MXRA5", "ITGBL1", "LGALS3", "C5orf38", "IL1RAPL1", "TSPAN13", "AC007405.8", "LOC285141", "TMSB15A", "ADAMTS1", "KCNK12", "PARP12", "DCHS1", "TSTD1", "SEZ6L", "SNHG12", "IL4I1", "CCDC48", "NKX6-2", "OAS3", "TUBB4", "CDH19", "GJC3", "TMEM100", "DDIT4L", "ARHGAP8", "PRR5", "PRR5-ARHGAP8", "DDAH2", "ADCYAP1R1", "C3orf58", "IL33", "IL1R1", "CD68", "MARS", "ALDH1A3", "C2orf80", "C7orf16", "KIAA1217", "AC067930.1", "CD248", "CMTM5", "HRCT1", "CCR1", "FAM129A", "PIGA", "PAX8", "GRB14", "ADD2", "CTLA4", "DYNC1I1", "KCNK1", "LRRC55", "PDGFRB", "SYTL5", "TMEM158", "PROCR", "PSPH", "CRIP2", "CBLC", "TMEM38A", "INSIG1", "ST6GALNAC3", "NOP16", "TPM1", "FAM176A", "PPM1K", "PNMA2", "OXTR", "TRAF1", "TRIB2", "TRIM14", "AQP4", "PEA15", "PRSS12", "LPHN2", "CD58", "NFASC", "CHRDL1", "AC026410.6", "IKBKE", "CRB2", "SRP9", "IFITM8P", "SLC16A3", "ANGPTL2", "COL4A6", "LFNG", "FZD3", "CDH6", "PPP4R1", "LAMA4", "LNX1", "EFNA5", "TMEM71", "RPSAP52", "SYNGR1", "GABRA5", "TESC", "TTYH1", "FAM181A", "HOXC13", "C1orf133", "LRP4", "FERMT3", "CDKN2C", "TSPAN9", "CXorf38", "HOXA1", "TTN", "TMEM176B", "CPNE2", "SALL1", "SLC26A2", "ZEB1", "GLYATL2", "RHOBTB3", "EFHD2", "MLPH", "MFAP2", "PTPRR", "RRP7A", "SNX10", "ZNF714", "MACROD2", "GMPR", "BMPER", "AIDA", "FAM5B", "PLCB1", "ADRA1B", "ELMOD1", "RP11-93B14.2", "hCG_2018279", "SYTL4", "NFIA", "CMAH", "PLAC9", "EVC2", "SCN11A", "RASGRP3", "RHPN1", "PTPRD", "PDE4B", "CXCL12", "CCKBR", "ISYNA1", "SDK2", "TNFAIP3", "ACTA2", "PCDHB12", "AMMECR1", "PKNOX2", "PTPRH", "DUSP16", "SULF1", "RP9", "GNG11", "C5orf41", "C9orf95", "DCBLD2", "RAD50", "RASGEF1C", "PCOLCE2", "PNP", "PLEKHA6", "HEPACAM", 267
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Transcriptional Characterization of
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