ASReml-S reference manual - VSN International

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Analysis of mixed modelsfor S langu
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D.G. ButlerQueensland Department of
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ContentsPreface . . . . . . . . . .
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ContentsviiB Available variance mod
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List of Figures1.1 Weekly body weig
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1.3 Data sets used 21.2.2 Help and
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1.3 Data sets used 41.3.2 Repeated
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1.3 Data sets used 6101 Sire 1 0102
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2.1 The linear mixed model 8Direct
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2.2 Estimation 10There is a corresp
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2.2 Estimation 12where H ij = ∂ 2
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2.5 Inference for random effects 14
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2.6 Inference for fixed effects 16T
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2.6 Inference for fixed effects 18t
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3Fitting the mixed model3.1 Introdu
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3.3 Introducing the asreml function
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3.6 Getting help3.7 The asreml func
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3.8 Fixed terms 26na.method.Xkeep.o
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3.8 Fixed terms 28Summary of reserv
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3.10 Conditional factors: the at()
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Table 3.2. Families and link functi
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3.15 Multivariate analysis 34R!trai
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Source df F_inc F_con MSource df dd
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4.1.1 Specifying variance models in
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4.2 A sequence of structures for th
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Σ = [σ ij ] :{σii = σ 2 , ∀i
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4.4 Variance model functions 44init
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The Matérn class4.4 Variance model
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4.4 Variance model functions 48Chol
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Required argumentsobj4.5 Rules for
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4.7 Constraining variance parameter
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5Genetic analysis5.1 IntroductionIn
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5.2 Pedigree, G-inverse objects and
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5.4 Using Pedigree and G-inverse ob
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6Prediction from the linear model6.
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Optional argumentslevels6.2 The pre
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6.2 The predict method 64The predic
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6.4 Complicated weighting 666.4 Com
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7The asreml class and related metho
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maxiter maximum number of iteration
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7.3 Methods and related functions 7
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7.3 Methods and related functions 7
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pedigree7.3 Methods and related fun
Page 90 and 91: 7.3 Methods and related functions 7
Page 92 and 93: 8Examples8.1 IntroductionThis secti
Page 94 and 95: 8.2 Split Plot Design 82In this exa
Page 96 and 97: 8.3 Unbalanced nested design 84[4,]
Page 98 and 99: 8.3 Unbalanced nested design 86adju
Page 100 and 101: 8.4 Sources of variability in unbal
Page 102 and 103: 8.5 Balanced repeated measures 902
Page 104 and 105: 8.5 Balanced repeated measures 92Ta
Page 106 and 107: 8.5 Balanced repeated measures 94wh
Page 108 and 109: 8.6 Spatial analysis of a field exp
Page 110 and 111: 8.6 Spatial analysis of a field exp
Page 112 and 113: Variety predicted.value standard.er
Page 114 and 115: 8.7 Unreplicated early generation v
Page 116 and 117: 8.7 Unreplicated early generation v
Page 118 and 119: 8.8 Paired Case-Control Study 106Th
Page 120 and 121: Terms added sequentially; adjusted
Page 122 and 123: 8.8 Paired Case-Control Study 110[
Page 124 and 125: 8.8 Paired Case-Control Study 112..
Page 126 and 127: 8.9 Balanced longitudinal data - Ra
Page 134 and 135: A.3 Aliasing and singularities 122W
Page 136 and 137: Table B.1: Details of the available
Page 138 and 139: B Available variance models 126Deta
Page 142 and 143: References 130W. W. Stroup, P. S. B
Page 144 and 145: Index 132F statistics, 17fa(,k), 49
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