Advanced Techniques in Diagnostic Microbiology

More documents

Recommendations

Info

Index 539 T TaqMan probes, 293–296 target amplification systems, non-PCR mediated DNA polymerase, 185 isothermal DNA amplification systems, 191–201 isothermal transcription-based RNA amplification, 184–191 PCR methods, 201–202 See also rolling-circle amplification; strand displacement amplification; specific kinds TAS. See transcription-based amplification system Taxo A disks, 93 Taxo P disks, 93 technology integration amplification methods, 478–479 biotech and information technology industry comparisons, 477–478 detection methods, 480–482 Tem-PCR, 474–477 Templex technology, 474–477 theranosis, 472–473 three-way junction (3WJ), 217–219 3SR. See self-sustained sequence replication 3WJ. See three-way junction time-resolved fluorescence (TRF), 45, 48, 52 TM Biosciences, 482–483 TMA. See transcription-mediated amplification Toxoplasma gondii, 297, 309 transcription-based amplification system (TAS), 186, 187 transcription-based ITA techniques, 189 transcription-based ITA technology, 191 transcription-mediated amplification Chlamydia trachomatis, 359 transcription-mediated amplification (TMA), 158–160, 186–187, 190–191 Trek Diagnostic, 394–395 Treponema pallidium blood screening, 347 hemagglutination test, 347 molecular detection methods, 361–362 traditional diagnostic methods, 360–361 See also blood screening TRF. See time-resolved fluorescence Trichomonas, 367–369 probes, 137 rapid antigen tests, 33, 37 triple sugar iron (TSI) agar slant, 101–102 Tropheryma whippelii 16S rRNA, 328 isopsoralens, 311 qualitative real-time amplification, 297 real-time PCR, 297 trypticase soy broth, 94–95 TSI. See triple sugar iron agar slant TT virus, 347–348 tube coagulase test, 91 two-color dye-swap method, 285 U urea agar slant, 98–99 urea breath tests, 11–22 antisecretory medications, 16 bleeding peptic ulcers, 16 carbon-13 test, 14–16 carbon-14 test, 13–14 infants-adolescents, 16 ureaplasma, 364–367 V vancomycin disk test, 91 vancomycin-resistant enterococci (VRE), 514–515 pulsed-field gel electrophoresis, 150–151 variable number tandem repeat (VNTR) methods, 399, 459, 513 variable number tandem repeat (VNTR)-PCR, 178–179 varicella-zoster virus rapid antigen tests, 35 reverse transcription PCR, 298 RFLP analysis, 253 Vibrio cholerae decarboxylase, 102 susceptibility testing, 64 virus-like particles (VLPs), 57 Vitek Systems, 69–70, 107 VLPs. See virus-like particles VNTR PCR. See variable number tandem repeat PCR Voges-Prokaure (VP) test, 98 VP. See Voges-Prokaure test VRE. See vancomycin-resistant enterococci VZV, 38
Page 2:
Advanced Techniques in Diagnostic M
Page 6:
Yi-Wei Tang Molecular Infectious Di
Page 10:
vi Contributors Wonder Drake Depart
Page 14:
viii Contributors Jacques Schrenzel
Page 18:
Preface Clinical microbiologists ar
Page 22:
Contents Part I Techniques 1 Automa
Page 26:
Contents xv 22 Review of Molecular
Page 30:
1 Automated Blood Cultures XIANG Y.
Page 34:
Interpretation of Significance 1. A
Page 38:
1. Automated Blood Cultures 7 conta
Page 42:
1. Automated Blood Cultures 9 Crump
Page 46:
2 Urea Breath Tests for Detection o
Page 50:
2. Urea Breath Tests 13 and point o
Page 54:
2. Urea Breath Tests 15 Other detec
Page 58:
TABLE 2.1. Comparison of 13 C-urea
Page 62:
2. Urea Breath Tests 19 Bazzoli, F.
Page 66:
2. Urea Breath Tests 21 Logan, R. (
Page 70:
3 Rapid Antigen Tests SHELDON CAMPB
Page 74:
3. Rapid Antigen Tests 25 antigen i
Page 78:
3. Rapid Antigen Tests 27 either on
Page 82:
3. Rapid Antigen Tests 29 and moves
Page 86:
3. Rapid Antigen Tests 31 Applicati
Page 90:
Fungi Cryptococcus Agglutination, E
Page 94:
Adenovirus, enteric types 40,41 EIA
Page 98:
3. Rapid Antigen Tests 37 Antigen t
Page 102:
3. Rapid Antigen Tests 39 retains a
Page 106:
3. Rapid Antigen Tests 41 Wilhelmi,
Page 110:
4. Advanced Antibody Detection 43 D
Page 114:
TABLE 4.1. Types of antibody detect
Page 118:
4. Advanced Antibody Detection 47 c
Page 122:
4. Advanced Antibody Detection 49 U
Page 126:
4. Advanced Antibody Detection 51 a
Page 130:
4. Advanced Antibody Detection 53 a
Page 134:
4. Advanced Antibody Detection 55 H
Page 138:
4. Advanced Antibody Detection 57 r
Page 142:
4. Advanced Antibody Detection 59 A
Page 146:
4. Advanced Antibody Detection 61 M
Page 150:
5 Phenotypic Testing of Bacterial A
Page 154:
5. Antimicrobial Susceptibility Tes
Page 158:
Page 162:
Page 166:
Susceptibility Tests for Fastidious
Page 170:
Page 174:
Page 178:
Page 182:
References 5. Antimicrobial Suscept
Page 186:
Page 190:
Page 194:
6. Biochemical Profile-Based Microb
Page 198:
Page 202:
Page 206:
Page 210:
Page 214:
Page 218:
Page 222:
Page 226:
Page 230:
Page 234:
Page 238:
Page 242:
Page 246:
Page 250:
Page 254:
Page 258:
7 Rapid Bacterial Characterization
Page 262:
7. MALDI-TOF MS 119 photons followe
Page 266:
7. MALDI-TOF MS 121 for analysis by
Page 270:
7. MALDI-TOF MS 123 Sample wells Ca
Page 274:
7. MALDI-TOF MS 125 also given. Thi
Page 278:
7. MALDI-TOF MS 127 characteristics
Page 282:
References 7. MALDI-TOF MS 129 Ande
Page 286:
7. MALDI-TOF MS 131 Hindre, T., Did
Page 290:
7. MALDI-TOF MS 133 von Wintzingero
Page 294:
8. Probe-Based Microbial Detection
Page 298:
Page 302:
Page 306:
Page 310:
9 Pulsed-Field Gel Electrophoresis
Page 314:
9. Pulsed-Field Gel Electrophoresis
Page 318:
Page 322:
PFGE Performance Characteristics 9.
Page 326:
Page 330:
Page 334:
Page 338:
Page 342:
TABLE 10.1. Nucleic acid amplificat
Page 346:
10. In Vitro Nucleic Acid Amplifica
Page 350:
Page 354:
Page 358:
11. PCR and Its Variations 167 Prin
Page 362:
11. PCR and Its Variations 169 Exte
Page 366:
11. PCR and Its Variations 171 targ
Page 370:
11. PCR and Its Variations 173 bind
Page 374:
11. PCR and Its Variations 175 Reve
Page 378:
11. PCR and Its Variations 177 ampl
Page 382:
11. PCR and Its Variations 179 pres
Page 386:
11. PCR and Its Variations 181 Soft
Page 390:
11. PCR and Its Variations 183 Saik
Page 394:
12. Non-PCR Amplification 185 1989;
Page 398:
12. Non-PCR Amplification 187 FIGUR
Page 402:
12. Non-PCR Amplification 189 This
Page 406:
12. Non-PCR Amplification 191 FIGUR
Page 410:
12. Non-PCR Amplification 193 and c
Page 414:
12. Non-PCR Amplification 195 used
Page 418:
12. Non-PCR Amplification 197 do no
Page 422:
Application of the SDA Technique Re
Page 426:
12. Non-PCR Amplification 201 Ancho
Page 430:
12. Non-PCR Amplification 203 Baner
Page 434:
12. Non-PCR Amplification 205 Guilf
Page 438:
12. Non-PCR Amplification 207 Nilss
Page 442:
12. Non-PCR Amplification 209 Wang,
Page 446:
13. Recent Advances in Probe Amplif
Page 450:
Page 454:
Page 458:
Page 462:
Page 466:
Page 470:
Page 474:
Page 478:
Page 482:
14. Signal Amplification Techniques
Page 486:
Page 490:
TABLE 14.1. Comparison of bDNA and
Page 494:
Page 498:
Page 502:
References 14. Signal Amplification
Page 506:
Page 510:
15 Detection and Characterization o
Page 514:
15. Agarose Gel Electrophoresis, So
Page 518:
Page 522:
Page 526:
Page 530:
Page 534:
Page 538:
Page 542:
Page 546:
Page 550:
Page 554:
16. Direct Nucleotide Sequencing 26
Page 558:
Page 562:
Page 566:
Page 570:
Page 574:
Page 578:
17. Microarrays for Microbial Chara
Page 582:
Page 586:
Page 590:
Page 594:
Page 598:
Page 602:
Page 606:
18 Diagnostic Microbiology Using Re
Page 610:
TABLE 18.1. Comparison of four fluo
Page 614:
18. Real-Time PCR Based on FRET 295
Page 618:
Page 622:
Page 626:
Page 630:
Page 634:
Page 638:
19. Amplification Product Inactivat
Page 642:
Page 646:
Page 650:
Page 654:
Page 658:
TABLE 19.1. Comparison of inactivat
Page 662:
Page 666:
20 Bacterial Identification Based o
Page 670:
20. Analysis of 16S rRNA Gene Seque
Page 674:
Page 678:
Page 682:
Page 686:
21 Molecular Techniques for Blood a
Page 690:
Hepatitis B Surface Antigen (Anti-H
Page 694:
Vironostika HIV-1 Microelisa System
Page 698:
21. Blood and Blood Product Screeni
Page 702:
Page 706:
Page 710:
Page 714:
Page 718:
Page 722:
Page 726:
22 Review of Molecular Techniques f
Page 730:
22. Molecular Techniques for STDs D
Page 734:
Page 738:
Page 742:
Page 746:
Traditional Diagnostic Methods 22.
Page 750:
Page 754:
Page 758:
Page 762:
Page 766:
Page 770:
References 22. Molecular Techniques
Page 774:
Page 778:
Page 782:
Page 786:
Page 790:
Page 794:
23 Advances in the Diagnosis of Myc
Page 798:
23. Diagnosis of Mycobacterium tube
Page 802:
Page 806:
Page 810:
Page 814:
Page 818:
Immunodiagnostic Methods 23. Diagno
Page 822:
Page 826:
Page 830:
Page 834:
Page 838:
Page 842:
24 Rapid Screening and Identificati
Page 846:
24. Rapid Screening and Identificat
Page 850:
Page 854:
Page 858:
Page 862:
Page 866:
Page 870:
Page 874:
25 Bead-Based Flow Cytometric Assay
Page 878:
A. Test 488-635 nm 680 nm Analyte o
Page 882:
25. Bead-Based Flow Cytometric Assa
Page 886:
Page 890:
Page 894:
Page 898:
Page 902:
Page 906:
Page 910:
26. Molecular Strain Typing 445 tha
Page 914:
26. Molecular Strain Typing 447 FIG
Page 918:
TABLE 26.1. Comparison of strain-ty
Page 922:
26. Molecular Strain Typing 451 Som
Page 926:
26. Molecular Strain Typing 453 and
Page 930:
26. Molecular Strain Typing 455 pat
Page 934:
Surveillance for Potential Infectio
Page 938:
26. Molecular Strain Typing 459 the
Page 942:
26. Molecular Strain Typing 461 of
Page 946:
26. Molecular Strain Typing 463 Cow
Page 950:
26. Molecular Strain Typing 465 Hea
Page 954:
26. Molecular Strain Typing 467 May
Page 958:
26. Molecular Strain Typing 469 Shu
Page 962:
26. Molecular Strain Typing 471 Ver
Page 966:
27. Molecular Differential Diagnose
Page 970:
Page 974:
Page 978:
Page 982:
Page 986:
Page 990:
Page 994:
Page 998:
Page 1002:
TABLE 27.11. Detection results of t
Page 1006:
TABLE 27.13. Detection of 25 HPV ty
Page 1010:
TABLE 27.16. List of pathogens iden
Page 1014:
TABLE 27.19. Results of the TB drug
Page 1018:
TABLE 27.21. Example data for the G
Page 1022:
Page 1026:
Page 1030:
28 Pathogen Detection in the Genomi
Page 1034:
28. Pathogen Detection in the Genom
Page 1038:
Cephid Smart Cycler 1600 16/run www
Page 1042:
28. Pathogen Detection in the Genom
Page 1046: 28. Pathogen Detection in the Genom
Page 1070: 526 Index B Babesia, 16S rRNA, 328
Page 1074: 528 Index Dot Blot hybridization, 3
Page 1078: 530 Index Helicobacter pylori (cont
Page 1082: 532 Index LCR. See ligase chain rea
Page 1086: 534 Index Mycobacterium tuberculosi
Page 1090: 536 Index pulsed-field gel electrop
Page 1094: 538 Index Staphylococcus aureus (MS
show all

Advanced Techniques in Diagnostic Microbiology

Create successful ePaper yourself

Delete template?

Save as template?