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11. PCR and Its Variations 181<br />

Software Operat<strong>in</strong>g systems Available froma<br />

CODEHOP On-l<strong>in</strong>e http://blocks.fhcrc.org/blocks/codehop.html<br />

DegenDesigner UNIX ftp anonymous evolution.bchs.uh.edu<br />

(Directory/pub/gene-server/unix)<br />

Primer Design DOS ftp anonymous ftp.chemie.uni-marburg.de<br />

(Directory/pub/PrimerDesign)<br />

Primer-Master DOS ftp anonymous ftp.ebi.ac.uk<br />

(Directory/pub/software/dos)<br />

PRIMER-MIT UNIX, Mac, DOS ftp anonymous genome.wi.mit.edu<br />

(Directory/pub/software/primer)<br />

Primers! Mac ftp anonymous wuarchive.wustl.edu<br />

(Directory/systems/mac/<strong>in</strong>fo-mac/sci/primers-<br />

10-<strong>in</strong>staller.hqx)<br />

Primer Selection (VGC) On-l<strong>in</strong>e http://alces.med.umn.edu/vgc.html<br />

Primer Selection (USC) On-l<strong>in</strong>e http://norp5424b.hsc.usc.edu/genetools.html<br />

References<br />

Bassam, B. J., & Caetano-Anolles, G. (1993). Automated “hot start” PCR us<strong>in</strong>g m<strong>in</strong>eral<br />

oil and paraff<strong>in</strong> wax. Biotechniques, 14(1), 30–34.<br />

Bej, A. K., Mahbubani, M. H., Miller, R., DiCesare, J. L., Haff, L., & Atlas, R. M. (1990).<br />

Multiplex PCR amplification and immobilized capture probes for detection of bacterial<br />

pathogens and <strong>in</strong>dicators <strong>in</strong> water. Mol Cell Probes, 4(5), 353–365.<br />

Birch, D. E. (1996). Simplified hot start PCR. Nature, 381(6581), 445–446.<br />

Boyer, N., & Marcell<strong>in</strong>, P. (2000). Pathogenesis, diagnosis and management of hepatitis C.<br />

J Hepatol, 32(1 Suppl), 98–112.<br />

Chamberla<strong>in</strong>, J. S., Gibbs, R. A., Ranier, J. E., Nguyen, P. N., & Caskey, C. T. (1988).<br />

Deletion screen<strong>in</strong>g of the Duchenne muscular dystrophy locus via multiplex DNA amplification.<br />

Nucleic Acids Res, 16(23), 11141–11156.<br />

Chou, Q., Russell, M., Birch, D. E., Raymond, J., & Bloch, W. (1992). Prevention of pre-<br />

PCR mis-prim<strong>in</strong>g and primer dimerization improves low-copy-number amplifications.<br />

Nucleic Acids Res, 20(7), 1717–1723.<br />

Clarke, J. R., & McClure, M. O. (1999). HIV-1 viral load test<strong>in</strong>g. J Infect, 38(3), 141–146.<br />

Collasius, M., Falk, H., Ciesler, C., & Valet, G. (1989). How to build an <strong>in</strong>expensive<br />

cyclotherm <strong>in</strong>strument for automated polymerase cha<strong>in</strong> reaction. Anal Biochem, 181(1),<br />

163–166.<br />

Don, R. H., Cox, P. T., Wa<strong>in</strong>wright, B. J., Baker, K., & Mattick, J. S. (1991). ‘Touchdown’<br />

PCR to circumvent spurious prim<strong>in</strong>g dur<strong>in</strong>g gene amplification. Nucleic Acids<br />

Res, 19(14), 4008.<br />

Fernandez-Cuenca, F. (2004). [Applications of PCR techniques for molecular epidemiology<br />

of <strong>in</strong>fectious diseases]. Enferm Infecc Microbiol Cl<strong>in</strong>, 22(6), 355–360.<br />

Fredricks, D. N., & Relman, D. A. (1999). Application of polymerase cha<strong>in</strong> reaction to the<br />

diagnosis of <strong>in</strong>fectious diseases. Cl<strong>in</strong> Infect Dis, 29(3), 475–486; quiz 487–478.<br />

Geha, D. J., Uhl, J. R., Gustaferro, C. A., & Pers<strong>in</strong>g, D. H. (1994). Multiplex PCR for identification<br />

of methicill<strong>in</strong>-resistant staphylococci <strong>in</strong> the cl<strong>in</strong>ical laboratory. J Cl<strong>in</strong> Microbiol,<br />

32(7), 1768–1772.

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