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Advanced Techniques in Diagnostic Microbiology

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162 H. Li and Y-W. Tang<br />

Currently, two diagnostic companies have their signal amplification products<br />

available for diagnostic microbiology purposes. The Digene hybrid capture system<br />

is widely used to determ<strong>in</strong>e human papillomavirus (HPV) <strong>in</strong>fection and viral types<br />

<strong>in</strong> cervical swabs or fresh cervical biopsy specimens as well as other diagnostic<br />

targets (Brown et al., 1993). Persistent high-risk human papillomavirus <strong>in</strong>fection<br />

detected by the System represents a reliable tool to select populations at risk for the<br />

development of high-grade cervical lesions (Brown et al., 1993; Schiffman et al.,<br />

1995). Besides HPV, Hybrid capture assays for the detection of hepatitis B virus,<br />

cytomegalovirus, C. trachomatis, and N. gonorrhoeae <strong>in</strong> cl<strong>in</strong>ical specimens are<br />

commercially available (Ho et al., 1999; Mazzulli et al., 1999; Schachter et al.,<br />

1999).<br />

Another signal amplification-based product is the branched DNA (bDNA) probe<br />

developed and manufactured by Chiron Corp., which uses multiple specific synthetic<br />

oligonucleotides hybridize to the target and capture the target onto a solid<br />

surface (Urdea et al., 1991). Synthetic bDNA amplifier molecules, which are<br />

enzyme conjugated, branched oligonucleotide probes, are added. Hybridization<br />

proceeds between the amplifier and the immobilized hybrids. After addition of<br />

a chemilum<strong>in</strong>escent substrate, light emission is measured and may be quantified.<br />

This technique represents an excellent method for quantitation and therapeutic<br />

response monitor<strong>in</strong>g of HCV and HIV-1 (Lau et al., 1993; Revets et al.,<br />

1996).<br />

Current commonly used <strong>in</strong> vitro NAA techniques are categorized and summarized<br />

<strong>in</strong> Table 10.1. Each of the three categories is discussed <strong>in</strong> the follow<strong>in</strong>g several<br />

chapters of this book, and the discussion is followed by a closer look at <strong>in</strong>dividual<br />

techniques <strong>in</strong>clud<strong>in</strong>g pr<strong>in</strong>ciples and applications <strong>in</strong> diagnostic microbiology.<br />

References<br />

Beggs, M. L., Cave, M. D., Marlowe, C., Cloney, L., Duck, P., & Eisenach, K. D. (1996).<br />

Characterization of Mycobacterium tuberculosis complex direct repeat sequence for use<br />

<strong>in</strong> cycl<strong>in</strong>g probe reaction. J Cl<strong>in</strong> Microbiol, 34, 2985–9.<br />

Birkenmeyer, L. G., & Mushahwar, I. K. (1991). DNA probe amplification methods. J Virol<br />

Methods, 35, 117–26.<br />

Brow, M. A., Oldenburg, M. C., Lyamichev, V., Heisler, L. M., Lyamicheva, N., Hall,<br />

J. G., Eagan, N. J., Olive, D. M., Smith, L. M., Fors, L., & Dahlberg, J. E. (1996).<br />

Differentiation of bacterial 16S rRNA genes and <strong>in</strong>tergenic regions and Mycobacterium<br />

tuberculosis katG genes by structure-specific endonuclease cleavage. J Cl<strong>in</strong> Microbiol,<br />

34, 3129–37.<br />

Brown, D. R., Bryan, J. T., Cramer, H., & Fife, K. H. (1993). Analysis of human papillomavirus<br />

types <strong>in</strong> exophytic condylomata acum<strong>in</strong>ata by hybrid capture and Southern blot<br />

techniques. J Cl<strong>in</strong> Microbiol, 31, 2667–73.<br />

Carroll, K. C., Aldeen, W. E., Morrison, M., Anderson, R., Lee, D., & Mottice, S. (1998).<br />

Evaluation of the Abbott LCx ligase cha<strong>in</strong> reaction assay for detection of Chlamydia<br />

trachomatis and Neisseria gonorrhoeae <strong>in</strong> ur<strong>in</strong>e and genital swab specimens from a<br />

sexually transmitted disease cl<strong>in</strong>ic population. J Cl<strong>in</strong> Microbiol, 36, 1630–3.

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