Gene Variant Report issued
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Lifestyle Genomics Research Centre Ltd.<br />
Plymouth Science Park, 1 Davy Road, Derriford, Plymouth, PL6 8BX , UNITED KINGDOM<br />
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SAMPLE PROCESSED BY:<br />
METHOD:<br />
DATA CHECKED FOR ACCURACY BY:<br />
Genome Centre at BARTS and The London School of Medicine and Dentistry<br />
Fluidigm TaqMan probe-based SNP genotyping / Illumina MiSeq, Next <strong>Gene</strong>ration<br />
sequencing<br />
Genome Centre at BARTS and The London School of Medicine and Dentistry<br />
NOTES:<br />
genotype has no risk alleles<br />
genotype has one risk allele<br />
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genotype has two risk allels<br />
either allele can be a risk or be<br />
beneficial<br />
Ctr+F to activate Search Engine: Look up genes, rsids, pathways / traits<br />
SNP RSID INTERPRET ☞ PARENT GENE & VARIANT ⚛ CATEGORY ☤ / PATHWAY ⥹ RISK ALLELES !! cp00035774<br />
rs2073658<br />
The T (minor) allele is associated<br />
with increased LDL cholesterol.<br />
USF1 Diet & Nutrition / Cholesterol Status TT CC<br />
rs3733890 rs3733890 BHMT Diet & Nutrition / Choline Status GG GG<br />
rs2236225<br />
G = Decreased risk of choline<br />
deficiency.<br />
MTHFD1 Diet & Nutrition / Choline Status AA GA<br />
rs1805087 rs1805087 MTR Diet & Nutrition / Choline Status GG AA<br />
rs738409<br />
C = Decreased need for choline in<br />
the body.<br />
PNPLA3 Diet & Nutrition / Choline Status GG CC<br />
rs738409<br />
T (minor) = higher risk of fatty liver -<br />
encourage more Choline.Whites<br />
with fatty liver - which may be due<br />
to low choline - were more likely to<br />
carry the T allele.<br />
PNPLA3 Diet & Nutrition / Choline Status TT CC
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