Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22
in2p3-00530281, version 1 - 28 Oct 2010
/*
// Lignes a activer pour forcer une liste precise de fichiers PLU
*/
File directory = new File(strDirectory);
fileChooser.setCurrentDirectory(directory);
// We want image extension filters
FileFilter filter =
new FileNameExtensionFilter("Image file (.tif, .tiff, .jpg, .jpeg, .gif, .png)",
new String[] {"tif", "tiff", "jpg", "jpeg", "gif", "png"});
fileChooser.addChoosableFileFilter(filter);
fileChooser.setMultiSelectionEnabled(true);
ArrayList listSelectedFiles = new ArrayList();
listSelectedFiles.add(new File(strDirectory, "fibro_PLU_1.tif"));
listSelectedFiles.add(new File(strDirectory, "fibro_PLU_2.tif"));
// Open selected files
fileChooser.setSelectedFiles((File[])listSelectedFiles.toArray(new File[listSelectedFiles.size()]));
files = fileChooser.getSelectedFiles();
pw.println("Current directory: " + System.getProperty("user.dir"));
//System.setProperty("user.dir", strDirectoy); // change CD
//System.out.println("CD=" + System.getProperty("user.dir"));
// We want image extension filters
FileFilter filter =
new FileNameExtensionFilter("Image file (.tif, .tiff, .jpg, .jpeg, .gif, .png)",
new String[] {"tif", "tiff", "jpg", "jpeg", "gif", "png"});
fileChooser.addChoosableFileFilter(filter);
fileChooser.setMultiSelectionEnabled(true);
fileChooser.setDialogTitle("Open raw flat-field image(s)...");
int retVal = fileChooser.showOpenDialog(null);
if (retVal == JFileChooser.CANCEL_OPTION) {
pw.println("Open file chooser command cancelled by user.");
}
//logger.fine("Open command cancelled by user.");
return null;
// Open selected files
files = fileChooser.getSelectedFiles();
pw.println("You selected:");
String[] fileNames = new String[files.length];
int i=0;
while (i < files.length) {
fileNames[i] = files[i].getPath();
pw.println("\t" + fileNames[i]);
// check correct filename
if (fileNames[i] == null) return null;
i++;
}
pw.println(i+" file(s) selected.");
// check that there all images have the same width, height, and color model
// Make sure the input image is a stack.
if(fileNames==null || fileNames.length