Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22
// projection result Backup
// PLU stack saved into ImagePlus object
String filename = outputDir+out_image.getTitle()+"_("+ZProjector.METHODS[method]+
"_projection).tif";
new FileSaver(out_image).saveAsTiff(filename);
in2p3-00530281, version 1 - 28 Oct 2010
}
/*
null);
return out_image;
Multiply each image channel by a mean of channel values
*/
public void createMask(ImagePlus PLUImg /* Stack des PLU moyennees */) {
// Checking
if (PLUImg==null) {
IJ.log("Unfortunately, image was null.");
IJ.noImage(); return;
}
if ( (PLUImg.getType()!=ImagePlus.COLOR_RGB) || (PLUImg.getBitDepth()!=24) ) {
IJ.showMessage("the plugin requires an RGB 24-bit image");
return;
}
// Obtain an RGB image stack
ImageStack is = PLUImg.getStack();
pw.println("Entry createMask: "+is.getWidth()+"x"+is.getHeight()+"x"+is.getSize());
// Splits an RGB image (or stack) into 3 8-bit grayscale images or stacks
IJ.showStatus("Splits an RGB image into three 8-bit grayscale images");
ImageStack rgbStack = splitStack(PLUImg);
// rgbStack with 3 channels required
if (rgbStack.getSize()!=3)
{ IJ.error("Stack Required"); return; }
String title = PLUImg.getTitle();
pw.println("createMask PLUImg title = " + title);
int slices = rgbStack.getSize(); // Returns the number of channels.
pw.println("createMask Num. of slices "+ slices);
DecimalFormat dec = new DecimalFormat("##0.0000");
// Recuperer les 3 slices correspondants aux canaux RGB
// Iterate all slices (slices are 1