Analyse avec le logiciel imagej d'un lot d'images en microscopie par ...

C:\Documents and Settings\montarou\Bureau\correction\chandez\PLU_RGB_Avg_v3_.java jeudi 22 juillet 2010 16:22
}
/*
return result;
Open GenericDialog for select image files
*/
private boolean showDialog(ImagePlus imp) {
width = imp.getWidth();
height = imp.getHeight();
// Conversion Options (/src/ij/plugin/Options.java)
double[] weights = ColorProcessor.getWeightingFactors();
boolean weighted = !(weights[0]==1d/3d && weights[1]==1d/3d && weights[2]==1d/3d);
GenericDialog gd = new GenericDialog("Plugin Options");
String msg = "This plugin calibrates a RGB image from an average flat-field
image.\n\n";
gd.addMessage(msg);
msg = "Number of images in flat-field sequence: "+stackPLUSize;
gd.addMessage(msg);
in2p3-00530281, version 1 - 28 Oct 2010
0);
// Different kinds of projections.
msg = "Select methods for producing average flat-field image:";
gd.addMessage(msg);
gd.addChoice("Projection Type", ZProjector.METHODS, ZProjector.METHODS[method]);
msg = "Select operator for calibration:";
gd.addMessage(msg);
gd.addChoice("Operation:", operators, operators[operator]);
gd.addCheckbox("Scale When Converting", ImageConverter.getDoScaling());
String prompt = "Weighted RGB Conversions";
if (weighted)
prompt+=" ("+IJ.d2s(weights[0])+","+IJ.d2s(weights[1])+","+IJ.d2s(weights[2])+")";
gd.addCheckbox(prompt, weighted);
gd.addNumericField("Save all images (Debug mode) (1) Display result only (0) ? ", 1,
msg = "Saving images ("+width+"x"+height+") in output directory:\n "+outputDir;
gd.addMessage(msg);
gd.showDialog();
if (gd.wasCanceled())
return false;
// Gets Projection methode
method = gd.getNextChoiceIndex();
// Gets Processing operator
operator = gd.getNextChoiceIndex();
// Gets do scaling option
doScaling = gd.getNextBoolean();
ImageConverter.setDoScaling(doScaling);
// Gets conversion option
Prefs.weightedColor = gd.getNextBoolean();
if (!Prefs.weightedColor)
ColorProcessor.setWeightingFactors(1d/3d, 1d/3d, 1d/3d);
else if (Prefs.weightedColor && !weighted)
ColorProcessor.setWeightingFactors(0.299, 0.587, 0.114);
// Asking for debug mode
-15